Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQL00_RS07850 Genome accession   NZ_LS483523
Coordinates   1454786..1455595 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1449786..1460595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS12250 - 1451286..1451411 (-) 126 WP_001818232.1 hypothetical protein -
  DQL00_RS07835 mutY 1451508..1452683 (+) 1176 WP_023396302.1 A/G-specific adenine glycosylase -
  DQL00_RS07840 micA 1452738..1453442 (+) 705 WP_000722076.1 response regulator YycF Regulator
  DQL00_RS07845 micB 1453435..1454784 (+) 1350 WP_000886213.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQL00_RS07850 vicX 1454786..1455595 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DQL00_RS07855 relB 1455686..1455928 (+) 243 WP_000208079.1 type II toxin-antitoxin system RelB family antitoxin -
  DQL00_RS07860 - 1455930..1456184 (+) 255 WP_023396301.1 type II toxin-antitoxin system RelE family toxin -
  DQL00_RS07865 - 1456231..1457007 (+) 777 WP_023396300.1 potassium channel family protein -
  DQL00_RS07870 - 1457263..1458249 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=1142980 DQL00_RS07850 WP_001289493.1 1454786..1455595(+) (vicX) [Streptococcus pneumoniae strain 4041STDY6836169]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1142980 DQL00_RS07850 WP_001289493.1 1454786..1455595(+) (vicX) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment