Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPOKI898_RS07160 | Genome accession | NZ_CP006827 |
| Coordinates | 1489684..1490259 (-) | Length | 191 a.a. |
| NCBI ID | WP_025276431.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki898 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1484684..1495259
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI898_RS07150 (HPOKI898_07450) | - | 1486985..1487575 (-) | 591 | Protein_1393 | restriction endonuclease subunit S | - |
| HPOKI898_RS07155 (HPOKI898_07455) | - | 1487605..1489651 (-) | 2047 | Protein_1394 | class I SAM-dependent DNA methyltransferase | - |
| HPOKI898_RS07160 (HPOKI898_07460) | comFC | 1489684..1490259 (-) | 576 | WP_025276431.1 | ComF family protein | Machinery gene |
| HPOKI898_RS07165 (HPOKI898_07465) | tmk | 1490247..1490822 (-) | 576 | WP_025276432.1 | dTMP kinase | - |
| HPOKI898_RS07170 (HPOKI898_07470) | coaD | 1490824..1491297 (-) | 474 | WP_024118156.1 | pantetheine-phosphate adenylyltransferase | - |
| HPOKI898_RS07175 (HPOKI898_07475) | - | 1491297..1491860 (-) | 564 | WP_000780122.1 | UbiX family flavin prenyltransferase | - |
| HPOKI898_RS07180 (HPOKI898_07480) | flgA | 1491870..1492526 (-) | 657 | WP_025277183.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPOKI898_RS07185 (HPOKI898_07485) | uvrD | 1492523..1494568 (-) | 2046 | WP_025276435.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21325.82 Da Isoelectric Point: 8.8889
>NTDB_id=114284 HPOKI898_RS07160 WP_025276431.1 1489684..1490259(-) (comFC) [Helicobacter pylori oki898]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=114284 HPOKI898_RS07160 WP_025276431.1 1489684..1490259(-) (comFC) [Helicobacter pylori oki898]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGACGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCATTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGACGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCATTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.382 |
100 |
0.974 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |