Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQL26_RS01445 Genome accession   NZ_LS483521
Coordinates   263558..265060 (+) Length   500 a.a.
NCBI ID   WP_111693013.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8316     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 258558..270060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL26_RS01430 (NCTC8316_00284) - 258611..259792 (-) 1182 WP_030126500.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DQL26_RS01435 (NCTC8316_00285) pbp3 259960..261192 (-) 1233 WP_002991111.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL26_RS01440 (NCTC8316_00286) amiA 261523..263493 (+) 1971 WP_109828501.1 peptide ABC transporter substrate-binding protein Regulator
  DQL26_RS01445 (NCTC8316_00287) amiC 263558..265060 (+) 1503 WP_111693013.1 ABC transporter permease Regulator
  DQL26_RS01450 (NCTC8316_00288) amiD 265060..265986 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQL26_RS01455 (NCTC8316_00289) amiE 265995..267065 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  DQL26_RS01460 (NCTC8316_00290) amiF 267058..267981 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQL26_RS09205 - 268019..268102 (-) 84 Protein_234 IS3 family transposase -
  DQL26_RS09210 - 268236..268555 (-) 320 Protein_235 IS3 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56130.47 Da        Isoelectric Point: 10.1618

>NTDB_id=1142821 DQL26_RS01445 WP_111693013.1 263558..265060(+) (amiC) [Streptococcus pyogenes strain NCTC8316]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLERFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFLGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMIGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1142821 DQL26_RS01445 WP_111693013.1 263558..265060(+) (amiC) [Streptococcus pyogenes strain NCTC8316]
ATGAAAAAATATATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAGAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAATATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTGGGCGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGATTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGTGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACATTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCCA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.8

100

0.598
  amiC Streptococcus thermophilus LMD-9

59.4

100

0.594
  amiC Streptococcus thermophilus LMG 18311

59.4

100

0.594

Multiple sequence alignment