Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DQL17_RS00270 Genome accession   NZ_LS483496
Coordinates   56651..57370 (-) Length   239 a.a.
NCBI ID   WP_050948682.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8455     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51651..62370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS00250 (NCTC8455_00048) nrdR 51763..52212 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  DQL17_RS00255 (NCTC8455_00049) recC 52274..55645 (-) 3372 WP_050948679.1 exodeoxyribonuclease V subunit gamma -
  DQL17_RS00260 (NCTC8455_00050) comQ 55691..55978 (-) 288 WP_050948680.1 DUF5374 domain-containing protein Machinery gene
  DQL17_RS00265 (NCTC8455_00051) - 55971..56654 (-) 684 Protein_50 DUF2572 family protein -
  DQL17_RS00270 (NCTC8455_00053) comO 56651..57370 (-) 720 WP_050948682.1 PulJ/GspJ family protein Machinery gene
  DQL17_RS00275 (NCTC8455_00054) comN 57370..57882 (-) 513 WP_050948683.1 pilus assembly FimT family protein Machinery gene
  DQL17_RS00280 (NCTC8455_00055) suhB 58082..58885 (+) 804 WP_111688720.1 inositol-1-monophosphatase -
  DQL17_RS00285 (NCTC8455_00056) nrfE 58994..60901 (+) 1908 WP_111688721.1 heme lyase NrfEFG subunit NrfE -
  DQL17_RS00290 (NCTC8455_00057) - 60901..61431 (+) 531 WP_050948686.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26805.14 Da        Isoelectric Point: 9.5423

>NTDB_id=1142706 DQL17_RS00270 WP_050948682.1 56651..57370(-) (comO) [Haemophilus influenzae strain NCTC8455]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQASNISYETSIVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1142706 DQL17_RS00270 WP_050948682.1 56651..57370(-) (comO) [Haemophilus influenzae strain NCTC8455]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAATCAACACATGCTATTGCATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGATGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAGCCTCAAACATCAGTTATGAAACCTCCATTGTTGTTGCGCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967

Multiple sequence alignment