Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DQL17_RS00275 Genome accession   NZ_LS483496
Coordinates   57370..57882 (-) Length   170 a.a.
NCBI ID   WP_050948683.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8455     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52370..62882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS00260 (NCTC8455_00050) comQ 55691..55978 (-) 288 WP_050948680.1 DUF5374 domain-containing protein Machinery gene
  DQL17_RS00265 (NCTC8455_00051) - 55971..56654 (-) 684 Protein_50 DUF2572 family protein -
  DQL17_RS00270 (NCTC8455_00053) comO 56651..57370 (-) 720 WP_050948682.1 PulJ/GspJ family protein Machinery gene
  DQL17_RS00275 (NCTC8455_00054) comN 57370..57882 (-) 513 WP_050948683.1 pilus assembly FimT family protein Machinery gene
  DQL17_RS00280 (NCTC8455_00055) suhB 58082..58885 (+) 804 WP_111688720.1 inositol-1-monophosphatase -
  DQL17_RS00285 (NCTC8455_00056) nrfE 58994..60901 (+) 1908 WP_111688721.1 heme lyase NrfEFG subunit NrfE -
  DQL17_RS00290 (NCTC8455_00057) - 60901..61431 (+) 531 WP_050948686.1 DsbE family thiol:disulfide interchange protein -
  DQL17_RS00295 (NCTC8455_00058) nrfF 61428..62582 (+) 1155 WP_050948687.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19822.03 Da        Isoelectric Point: 8.7271

>NTDB_id=1142707 DQL17_RS00275 WP_050948683.1 57370..57882(-) (comN) [Haemophilus influenzae strain NCTC8455]
MQKGMTLVELLIGLAIISIALSFAVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1142707 DQL17_RS00275 WP_050948683.1 57370..57882(-) (comN) [Haemophilus influenzae strain NCTC8455]
ATGCAAAAAGGTATGACATTAGTGGAATTATTGATTGGATTAGCCATTATCAGCATTGCACTGAGTTTTGCCGTGCCATT
ATGGCAAACAGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGCGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.235

100

0.982

Multiple sequence alignment