Detailed information
Bioinformatically predicted
Overview
| Name | comB9 | Type | Machinery gene |
| Locus tag | DQL14_RS01190 | Genome accession | NZ_LS483488 |
| Coordinates | 245733..246713 (+) | Length | 326 a.a. |
| NCBI ID | WP_108169557.1 | Uniprot ID | - |
| Organism | Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 240733..251713
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL14_RS01160 (NCTC11637_00234) | panD | 242154..242507 (+) | 354 | WP_000142226.1 | aspartate 1-decarboxylase | - |
| DQL14_RS01165 (NCTC11637_00235) | - | 242510..242812 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| DQL14_RS01170 (NCTC11637_00236) | - | 242812..243807 (+) | 996 | WP_108169555.1 | PDZ domain-containing protein | - |
| DQL14_RS01175 (NCTC11637_00237) | comB6 | 243815..244870 (+) | 1056 | WP_108169556.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| DQL14_RS01180 (NCTC11637_00238) | comB7 | 244886..244999 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| DQL14_RS01185 (NCTC11637_00239) | comB8 | 244996..245733 (+) | 738 | WP_000660523.1 | type IV secretion system protein | Machinery gene |
| DQL14_RS01190 (NCTC11637_00240) | comB9 | 245733..246713 (+) | 981 | WP_108169557.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| DQL14_RS01195 (NCTC11637_00241) | comB10 | 246706..247842 (+) | 1137 | WP_108169558.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| DQL14_RS01200 (NCTC11637_00242) | - | 247913..249325 (+) | 1413 | WP_108169559.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| DQL14_RS01205 (NCTC11637_00243) | gmd | 249367..250512 (+) | 1146 | WP_111735917.1 | GDP-mannose 4,6-dehydratase | - |
| DQL14_RS01210 (NCTC11637_00244) | - | 250505..251437 (+) | 933 | WP_108169561.1 | GDP-L-fucose synthase family protein | - |
Sequence
Protein
Download Length: 326 a.a. Molecular weight: 37578.32 Da Isoelectric Point: 9.4540
>NTDB_id=1142659 DQL14_RS01190 WP_108169557.1 245733..246713(+) (comB9) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MRKVLYALMGLLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTLENTPTNNKPLKEEKEETKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGI
CSKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFV
KKGKDE
MRKVLYALMGLLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTLENTPTNNKPLKEEKEETKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGI
CSKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFV
KKGKDE
Nucleotide
Download Length: 981 bp
>NTDB_id=1142659 DQL14_RS01190 WP_108169557.1 245733..246713(+) (comB9) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGCGTAAGGTTTTATACGCTCTCATGGGCCTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATACCCTTGAAAATACCCTTGAAAATACCCCCACAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAACGCCA
TGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATT
TGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAA
AAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGG
GCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTTGTC
AAAAAGGGTAAAGATGAATAA
ATGCGTAAGGTTTTATACGCTCTCATGGGCCTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATACCCTTGAAAATACCCTTGAAAATACCCCCACAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAACGCCA
TGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATT
TGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAA
AAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGG
GCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTTGTC
AAAAAGGGTAAAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB9 | Helicobacter pylori P1 |
96.626 |
100 |
0.966 |