Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DQL18_RS00280 Genome accession   NZ_LS483486
Coordinates   56846..57562 (-) Length   238 a.a.
NCBI ID   WP_042593718.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12194     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51846..62562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL18_RS00260 (NCTC12194_00051) nrdR 51953..52402 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  DQL18_RS00265 (NCTC12194_00052) recC 52457..55822 (-) 3366 WP_042593721.1 exodeoxyribonuclease V subunit gamma -
  DQL18_RS00270 (NCTC12194_00053) comQ 55868..56155 (-) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  DQL18_RS00275 (NCTC12194_00054) comP 56148..56831 (-) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  DQL18_RS00280 (NCTC12194_00055) comO 56846..57562 (-) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  DQL18_RS00285 (NCTC12194_00056) comN 57562..58074 (-) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DQL18_RS00290 (NCTC12194_00057) suhB 58274..59077 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  DQL18_RS00295 (NCTC12194_00058) nrfE 59186..61093 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  DQL18_RS00300 (NCTC12194_00059) - 61093..61623 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26759.16 Da        Isoelectric Point: 9.6935

>NTDB_id=1142610 DQL18_RS00280 WP_042593718.1 56846..57562(-) (comO) [Haemophilus influenzae strain NCTC12194]
MMKVLLKGKTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1142610 DQL18_RS00280 WP_042593718.1 56846..57562(-) (comO) [Haemophilus influenzae strain NCTC12194]
ATGATGAAAGTATTATTAAAAGGGAAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment