Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DQL18_RS00285 Genome accession   NZ_LS483486
Coordinates   57562..58074 (-) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12194     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52562..63074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL18_RS00270 (NCTC12194_00053) comQ 55868..56155 (-) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  DQL18_RS00275 (NCTC12194_00054) comP 56148..56831 (-) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  DQL18_RS00280 (NCTC12194_00055) comO 56846..57562 (-) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  DQL18_RS00285 (NCTC12194_00056) comN 57562..58074 (-) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DQL18_RS00290 (NCTC12194_00057) suhB 58274..59077 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  DQL18_RS00295 (NCTC12194_00058) nrfE 59186..61093 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  DQL18_RS00300 (NCTC12194_00059) - 61093..61623 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -
  DQL18_RS00305 (NCTC12194_00060) nrfF 61620..62762 (+) 1143 WP_005688390.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=1142611 DQL18_RS00285 WP_013526183.1 57562..58074(-) (comN) [Haemophilus influenzae strain NCTC12194]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1142611 DQL18_RS00285 WP_013526183.1 57562..58074(-) (comN) [Haemophilus influenzae strain NCTC12194]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACAGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAGCGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment