Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DQL22_RS05285 Genome accession   NZ_LS483485
Coordinates   1029105..1029626 (+) Length   173 a.a.
NCBI ID   WP_111300394.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain NCTC11096     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1024105..1034626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL22_RS05245 (NCTC11096_01054) tolR 1024822..1025244 (+) 423 WP_050694068.1 colicin uptake protein TolR -
  DQL22_RS05250 (NCTC11096_01055) tolA 1025263..1026465 (+) 1203 WP_111300396.1 cell envelope integrity protein TolA -
  DQL22_RS05255 (NCTC11096_01056) tolB 1026501..1027781 (+) 1281 WP_083014831.1 Tol-Pal system beta propeller repeat protein TolB -
  DQL22_RS05260 (NCTC11096_01057) pal 1027796..1028260 (+) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  DQL22_RS05285 (NCTC11096_01062) comN 1029105..1029626 (+) 522 WP_111300394.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DQL22_RS05290 (NCTC11096_01063) - 1029613..1030356 (+) 744 WP_404799754.1 type II secretion system protein J -
  DQL22_RS05295 (NCTC11096_01064) - 1030353..1031039 (+) 687 WP_109843085.1 DUF2572 family protein -
  DQL22_RS05300 (NCTC11096_01065) comQ 1031023..1031325 (+) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20258.35 Da        Isoelectric Point: 8.2465

>NTDB_id=1142600 DQL22_RS05285 WP_111300394.1 1029105..1029626(+) (comN) [Aggregatibacter aphrophilus strain NCTC11096]
MQKGFTLLEILIALLIISVLLTLSLPAWQQHRQQNILQKEQQKLYIFLRQIQARVENSSDIWFLIANRHQMTQRWCLTAQ
IKSDKLCDCLNPQHCPQEVSAHFYYPTFEDTILISKRYYPFEFTRLSGIRNTASTACFVLQANHQRNLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1142600 DQL22_RS05285 WP_111300394.1 1029105..1029626(+) (comN) [Aggregatibacter aphrophilus strain NCTC11096]
ATGCAAAAGGGATTTACCCTGTTAGAAATCTTAATCGCCCTGCTGATAATAAGTGTATTGCTCACATTGTCGCTTCCCGC
ATGGCAGCAGCATCGTCAGCAAAATATTTTGCAGAAAGAACAACAAAAGCTGTATATCTTTTTGCGTCAAATTCAGGCTA
GAGTGGAAAATTCATCCGACATTTGGTTTTTAATTGCGAATCGCCATCAAATGACGCAACGTTGGTGCCTCACTGCTCAA
ATTAAGAGTGACAAATTATGTGATTGCCTCAACCCGCAGCATTGCCCGCAAGAGGTTTCCGCACATTTTTACTATCCTAC
ATTTGAAGACACCATATTAATCAGCAAGCGTTACTATCCTTTTGAATTTACCCGTTTGAGTGGTATTCGGAACACGGCGT
CAACAGCCTGTTTTGTGTTACAAGCGAATCATCAACGAAACCTATTTTCATTTTTTAATGTGGGTAGTTTGAAGTTAAAA
GATAACCAATCCTTAAGCGCCTGTGTTAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

58.58

97.688

0.572

Multiple sequence alignment