Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   DQL22_RS05300 Genome accession   NZ_LS483485
Coordinates   1031023..1031325 (+) Length   100 a.a.
NCBI ID   WP_005701125.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain NCTC11096     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026023..1036325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL22_RS05255 (NCTC11096_01056) tolB 1026501..1027781 (+) 1281 WP_083014831.1 Tol-Pal system beta propeller repeat protein TolB -
  DQL22_RS05260 (NCTC11096_01057) pal 1027796..1028260 (+) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  DQL22_RS05285 (NCTC11096_01062) comN 1029105..1029626 (+) 522 WP_111300394.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DQL22_RS05290 (NCTC11096_01063) - 1029613..1030356 (+) 744 WP_404799754.1 type II secretion system protein J -
  DQL22_RS05295 (NCTC11096_01064) - 1030353..1031039 (+) 687 WP_109843085.1 DUF2572 family protein -
  DQL22_RS05300 (NCTC11096_01065) comQ 1031023..1031325 (+) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  DQL22_RS05305 (NCTC11096_01066) recC 1031363..1034740 (+) 3378 WP_111300391.1 exodeoxyribonuclease V subunit gamma -
  DQL22_RS05310 (NCTC11096_01067) rimI 1034743..1035186 (-) 444 WP_111300389.1 ribosomal protein S18-alanine N-acetyltransferase -
  DQL22_RS05315 (NCTC11096_01068) - 1035199..1035639 (-) 441 WP_111300387.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11683.55 Da        Isoelectric Point: 10.7466

>NTDB_id=1142601 DQL22_RS05300 WP_005701125.1 1031023..1031325(+) (comQ) [Aggregatibacter aphrophilus strain NCTC11096]
MISRLNFIRQKGMSLLSLLVALSLFSGIFLTFNQWGNAQRKSAVEIYQRFQGIQIAENQRQRQFLGLSCESEIYQNHIRF
QVVCRQNQVTVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=1142601 DQL22_RS05300 WP_005701125.1 1031023..1031325(+) (comQ) [Aggregatibacter aphrophilus strain NCTC11096]
ATGATTTCACGCCTTAATTTTATTCGGCAGAAAGGCATGAGCTTGCTGTCGTTGTTGGTGGCATTAAGTTTATTTAGCGG
CATTTTTCTCACGTTTAACCAATGGGGTAATGCACAACGTAAAAGTGCGGTGGAAATTTACCAACGTTTTCAAGGGATCC
AAATTGCCGAAAATCAACGGCAACGCCAGTTTCTTGGTCTGTCTTGTGAAAGTGAGATTTACCAAAATCATATTCGTTTT
CAGGTGGTTTGTCGGCAAAATCAGGTGACGGTGAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

55.319

94

0.52

Multiple sequence alignment