Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPOKI828_RS07055 Genome accession   NZ_CP006826
Coordinates   1459422..1459997 (-) Length   191 a.a.
NCBI ID   WP_025223304.1    Uniprot ID   -
Organism   Helicobacter pylori oki828     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1454422..1464997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI828_RS07045 - 1456102..1457353 (-) 1252 Protein_1365 restriction endonuclease subunit S -
  HPOKI828_RS07050 (HPOKI828_07375) - 1457350..1459389 (-) 2040 WP_025223303.1 class I SAM-dependent DNA methyltransferase -
  HPOKI828_RS07055 (HPOKI828_07380) comFC 1459422..1459997 (-) 576 WP_025223304.1 ComF family protein Machinery gene
  HPOKI828_RS07060 (HPOKI828_07385) tmk 1459985..1460560 (-) 576 WP_025223305.1 dTMP kinase -
  HPOKI828_RS07070 (HPOKI828_07390) coaD 1460742..1461245 (-) 504 WP_025223306.1 pantetheine-phosphate adenylyltransferase -
  HPOKI828_RS07075 (HPOKI828_07395) - 1461245..1461808 (-) 564 WP_025223307.1 UbiX family flavin prenyltransferase -
  HPOKI828_RS07080 (HPOKI828_07400) flgA 1461818..1462474 (-) 657 WP_025223308.1 flagellar basal body P-ring formation chaperone FlgA -
  HPOKI828_RS07085 (HPOKI828_07405) uvrD 1462471..1464516 (-) 2046 WP_025223309.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21319.95 Da        Isoelectric Point: 9.4519

>NTDB_id=114256 HPOKI828_RS07055 WP_025223304.1 1459422..1459997(-) (comFC) [Helicobacter pylori oki828]
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=114256 HPOKI828_RS07055 WP_025223304.1 1459422..1459997(-) (comFC) [Helicobacter pylori oki828]
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
TAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.812

100

0.958
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment