Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOKI828_RS06600 Genome accession   NZ_CP006826
Coordinates   1366192..1367505 (-) Length   437 a.a.
NCBI ID   WP_025223238.1    Uniprot ID   -
Organism   Helicobacter pylori oki828     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1361192..1372505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI828_RS06570 (HPOKI828_06865) nadC 1361655..1362476 (-) 822 WP_025223234.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPOKI828_RS06575 (HPOKI828_06870) nadA 1362476..1363486 (-) 1011 WP_025223235.1 quinolinate synthase NadA -
  HPOKI828_RS06580 (HPOKI828_06875) - 1363476..1364279 (-) 804 WP_025223236.1 phosphatidylserine decarboxylase -
  HPOKI828_RS06585 (HPOKI828_06880) - 1364276..1364779 (-) 504 WP_000953085.1 DUF6115 domain-containing protein -
  HPOKI828_RS06590 (HPOKI828_06885) - 1364792..1365286 (-) 495 WP_014536371.1 hypothetical protein -
  HPOKI828_RS06595 (HPOKI828_06890) mqnP 1365279..1366163 (-) 885 WP_025223237.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOKI828_RS06600 (HPOKI828_06895) comEC/comE3 1366192..1367505 (-) 1314 WP_025223238.1 ComEC/Rec2 family competence protein Machinery gene
  HPOKI828_RS06605 (HPOKI828_06900) - 1367502..1368962 (-) 1461 WP_025223239.1 replicative DNA helicase -
  HPOKI828_RS06610 (HPOKI828_06905) - 1368973..1370367 (-) 1395 WP_025223240.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOKI828_RS06615 (HPOKI828_06910) crdS 1370370..1371572 (-) 1203 WP_080276511.1 copper-sensing histidine kinase CrdS -
  HPOKI828_RS06620 (HPOKI828_06915) crdR 1371538..1372179 (-) 642 WP_025223242.1 copper response regulator transcription factor CrdR -
  HPOKI828_RS08185 (HPOKI828_06920) - 1372267..1372491 (-) 225 Protein_1284 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50136.09 Da        Isoelectric Point: 9.8368

>NTDB_id=114254 HPOKI828_RS06600 WP_025223238.1 1366192..1367505(-) (comEC/comE3) [Helicobacter pylori oki828]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKAYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRYFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIITHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLAIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=114254 HPOKI828_RS06600 WP_025223238.1 1366192..1367505(-) (comEC/comE3) [Helicobacter pylori oki828]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTCACAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCTTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAGCCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCTATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGTGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTACGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGTATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment