Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   XFHB_RS06705 Genome accession   NZ_CP009885
Coordinates   1365594..1366190 (-) Length   198 a.a.
NCBI ID   WP_004084887.1    Uniprot ID   -
Organism   Xylella fastidiosa strain Hib4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1360594..1371190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFHB_RS06680 (XFHB_06250) - 1360750..1361703 (+) 954 WP_088578033.1 MoxR family ATPase -
  XFHB_RS06685 (XFHB_06255) - 1361706..1362665 (+) 960 WP_088578034.1 DUF58 domain-containing protein -
  XFHB_RS06690 (XFHB_06260) - 1362658..1364703 (+) 2046 WP_088578035.1 DUF3488 and transglutaminase-like domain-containing protein -
  XFHB_RS06695 (XFHB_06265) - 1364597..1365118 (+) 522 WP_031336615.1 Slp family lipoprotein -
  XFHB_RS06700 (XFHB_06270) - 1365186..1365530 (-) 345 WP_023907649.1 histidine triad nucleotide-binding protein -
  XFHB_RS06705 (XFHB_06275) recR 1365594..1366190 (-) 597 WP_004084887.1 recombination mediator RecR Machinery gene
  XFHB_RS06710 (XFHB_06280) - 1366388..1366708 (-) 321 WP_031336616.1 YbaB/EbfC family nucleoid-associated protein -
  XFHB_RS06715 (XFHB_06285) dnaX 1366715..1368541 (-) 1827 WP_046420009.1 DNA polymerase III subunit gamma/tau -
  XFHB_RS14890 - 1368974..1369474 (+) 501 WP_228762866.1 hypothetical protein -
  XFHB_RS14895 - 1369462..1369809 (+) 348 WP_228762867.1 hypothetical protein -
  XFHB_RS06730 (XFHB_06300) - 1370311..1370607 (-) 297 WP_228762868.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21759.79 Da        Isoelectric Point: 6.5786

>NTDB_id=114254 XFHB_RS06705 WP_004084887.1 1365594..1366190(-) (recR) [Xylella fastidiosa strain Hib4]
MSTHLLEQLIDAFRILPGVGQKTAQRMAYHVLEREREGGQRLADVLSRAIEKIGHCTECRDFSETKICAICANSSRDRHQ
LCVVESPPDRLAIEQATGYRGLYFILQGRLSPLDGIGPHELGLDHLGQRLAAGEVTELIIATNATVEGETTAHYLALLAR
QHGIRPSRLAQGLPLGGELEYLDRGTLSHAFGTRTEVV

Nucleotide


Download         Length: 597 bp        

>NTDB_id=114254 XFHB_RS06705 WP_004084887.1 1365594..1366190(-) (recR) [Xylella fastidiosa strain Hib4]
ATGAGTACACATTTGCTTGAGCAGTTAATTGACGCCTTCCGTATCTTGCCAGGTGTCGGTCAGAAGACCGCGCAGCGTAT
GGCCTACCATGTGCTCGAGCGCGAGCGTGAAGGTGGGCAGCGCTTGGCTGATGTGCTGAGCCGTGCGATTGAAAAAATTG
GTCATTGTACGGAGTGTCGTGACTTCAGTGAGACCAAAATCTGTGCGATCTGTGCTAACTCCAGCCGTGACCGTCATCAG
TTGTGCGTGGTCGAGTCCCCCCCTGATCGGCTGGCGATTGAGCAAGCCACTGGCTATCGTGGACTATATTTTATTTTGCA
GGGGCGCCTGTCCCCGCTGGATGGGATCGGCCCTCATGAACTTGGGTTGGACCATTTGGGGCAACGTCTTGCTGCAGGTG
AGGTGACGGAGCTCATCATTGCGACTAATGCGACGGTGGAGGGTGAGACGACAGCGCACTACTTGGCGCTCCTGGCGCGC
CAACACGGCATACGCCCCAGCCGACTGGCACAAGGTTTGCCCTTGGGTGGGGAGCTGGAATACTTAGACCGCGGCACTCT
TTCGCATGCGTTCGGCACCCGTACTGAAGTGGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.75

96.97

0.424
  recR Bacillus subtilis subsp. subtilis str. 168

42.188

96.97

0.409
  recR Streptococcus pneumoniae R6

38.542

96.97

0.374

Multiple sequence alignment