Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DQL46_RS08060 Genome accession   NZ_LS483482
Coordinates   1683143..1684015 (-) Length   290 a.a.
NCBI ID   WP_141750749.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain NCTC12217     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1678143..1689015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL46_RS08045 (NCTC12217_01639) xerC 1678518..1679411 (-) 894 WP_002459293.1 tyrosine recombinase XerC -
  DQL46_RS08050 (NCTC12217_01640) trmFO 1679543..1680850 (-) 1308 WP_002459294.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DQL46_RS08055 (NCTC12217_01641) topA 1680902..1682977 (-) 2076 WP_176744575.1 type I DNA topoisomerase -
  DQL46_RS08060 (NCTC12217_01642) dprA 1683143..1684015 (-) 873 WP_141750749.1 DNA-processing protein DprA Machinery gene
  DQL46_RS08065 (NCTC12217_01643) - 1684674..1685909 (-) 1236 WP_037545870.1 aminoacyltransferase -
  DQL46_RS08070 (NCTC12217_01644) - 1685923..1687071 (-) 1149 WP_070648624.1 LysM peptidoglycan-binding domain-containing protein -
  DQL46_RS08075 (NCTC12217_01645) sucD 1687267..1688175 (-) 909 WP_002478289.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33010.81 Da        Isoelectric Point: 7.9749

>NTDB_id=1142526 DQL46_RS08060 WP_141750749.1 1683143..1684015(-) (dprA) [Staphylococcus lugdunensis strain NCTC12217]
MDDIVLLKLRYSGIQAPQFQRLIHGYPNFLSFSEDDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITIN
SQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSQFNRRFTIVSGLAKGADSMAHELAIQ
HHHATIAVLGFGHLTHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAH
ALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1142526 DQL46_RS08060 WP_141750749.1 1683143..1684015(-) (dprA) [Staphylococcus lugdunensis strain NCTC12217]
GTGGACGATATTGTTTTATTAAAATTACGTTATAGTGGTATACAAGCGCCTCAATTTCAACGGCTTATACATGGGTACCC
TAACTTTTTATCATTTTCAGAGGATGATTTACTTAATTTATTATCGAAGACAGAAATTAAAAAATGGTTCGGAGACATAG
CTGCACAATACAAACGGATTTCTGAAGATTATATTTTAACATCATTATACGATGCCTCTGTCAAATTTATCACTATCAAT
AGCCAATGTTATTCTACCTTATTAAAAGAAATTTATGATTTTCCACCAATCCTATTTTATCGTGGTGATATTTCACTCCT
TAATTCAAACACTACATTAGCCGTTGTCGGTTCTCGTAAAGCCACAAGTTATTCCTACAAAGCTTTAGACTTTTTATTTA
GCCAATTTAATCGTCGTTTCACGATTGTTTCAGGTTTAGCCAAAGGAGCCGATAGCATGGCACACGAATTAGCTATACAA
CACCATCATGCGACAATCGCAGTGCTTGGATTTGGACATCTCACACATTATCCTAAAGAAACATATATTTTACGTCAAAA
AATTGAAGCTCATCACTTATCAATCAGTGAATATTTACCTTTCGAACCAGTAACGAAATATCATTTTCCACAACGAAATC
GCTTAATAAGCGGTATTTCTAAAGGTGTACTGATTACCGAAGCTGAAAAACGTAGTGGTAGTCAGATTACAATCGCACAT
GCACTTGACCAAAATAGAAATGTTTATGTTCTTCCAGGAGATCTATTTAATCCACTTACACAAGGTAATTTATATCGTGC
ACGAGAAGGAGCGTGTATTGTTACAGGAGCTGAAGATATTTTAATGGATTATGATATTAATAAAGTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.136

100

0.49
  dprA Staphylococcus aureus MW2

48.136

100

0.49

Multiple sequence alignment