Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOKI828_RS01710 Genome accession   NZ_CP006826
Coordinates   339579..339983 (+) Length   134 a.a.
NCBI ID   WP_025222562.1    Uniprot ID   -
Organism   Helicobacter pylori oki828     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334579..344983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI828_RS01675 (HPOKI828_01755) - 334751..335689 (-) 939 WP_025222558.1 tetraacyldisaccharide 4'-kinase -
  HPOKI828_RS01680 (HPOKI828_01760) - 335686..336468 (-) 783 WP_025222559.1 NAD+ synthase -
  HPOKI828_RS01690 ilvC 336717..337709 (+) 993 WP_001207811.1 ketol-acid reductoisomerase -
  HPOKI828_RS01695 (HPOKI828_01775) minD 337734..338540 (+) 807 WP_025222560.1 septum site-determining protein MinD -
  HPOKI828_RS01700 (HPOKI828_01780) minE 338537..338770 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPOKI828_RS01705 (HPOKI828_01785) dprA 338782..339582 (+) 801 WP_025222561.1 DNA-processing protein DprA Machinery gene
  HPOKI828_RS01710 (HPOKI828_01790) dprB 339579..339983 (+) 405 WP_025222562.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI828_RS01715 (HPOKI828_01795) - 340113..340367 (+) 255 WP_025222563.1 tetratricopeptide repeat protein -
  HPOKI828_RS01720 (HPOKI828_01800) - 340555..340893 (+) 339 WP_025222564.1 hypothetical protein -
  HPOKI828_RS01725 (HPOKI828_01805) - 340877..341437 (+) 561 WP_025222565.1 hypothetical protein -
  HPOKI828_RS01730 (HPOKI828_01815) - 341610..342491 (-) 882 WP_025222566.1 RluA family pseudouridine synthase -
  HPOKI828_RS01735 (HPOKI828_01820) recJ 342491..344041 (-) 1551 WP_025222567.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15252.75 Da        Isoelectric Point: 9.1725

>NTDB_id=114246 HPOKI828_RS01710 WP_025222562.1 339579..339983(+) (dprB) [Helicobacter pylori oki828]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQVSRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=114246 HPOKI828_RS01710 WP_025222562.1 339579..339983(+) (dprB) [Helicobacter pylori oki828]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGTCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment