Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   DQM71_RS10550 Genome accession   NZ_LS483472
Coordinates   2168562..2168942 (-) Length   126 a.a.
NCBI ID   WP_000836914.1    Uniprot ID   A0A098SJS3
Organism   Acinetobacter baumannii strain NCTC13421     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2163562..2173942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM71_RS10520 (NCTC13421_02109) tadA 2163681..2164184 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  DQM71_RS10525 (NCTC13421_02110) - 2164191..2165315 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  DQM71_RS10530 (NCTC13421_02111) ung 2165312..2166025 (-) 714 WP_001177527.1 uracil-DNA glycosylase -
  DQM71_RS10535 (NCTC13421_02112) - 2166076..2166672 (-) 597 WP_000908449.1 6-carboxytetrahydropterin synthase -
  DQM71_RS10540 (NCTC13421_02113) gspK 2166902..2167861 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  DQM71_RS10545 (NCTC13421_02114) xcpW 2167861..2168562 (-) 702 WP_000594579.1 type II secretion system minor pseudopilin GspJ Machinery gene
  DQM71_RS10550 (NCTC13421_02115) xcpV 2168562..2168942 (-) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  DQM71_RS10555 (NCTC13421_02116) - 2168932..2169486 (-) 555 WP_000841373.1 type II secretion system protein -
  DQM71_RS10560 (NCTC13421_02117) - 2169496..2170104 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  DQM71_RS10565 (NCTC13421_02118) - 2170142..2170915 (-) 774 WP_000497300.1 TatD family hydrolase -
  DQM71_RS10570 (NCTC13421_02119) - 2170933..2171274 (-) 342 WP_001183027.1 PilZ domain-containing protein -
  DQM71_RS10575 (NCTC13421_02120) - 2171286..2172266 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  DQM71_RS10580 (NCTC13421_02121) kdsB 2172278..2173039 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14074.34 Da        Isoelectric Point: 10.0341

>NTDB_id=1142376 DQM71_RS10550 WP_000836914.1 2168562..2168942(-) (xcpV) [Acinetobacter baumannii strain NCTC13421]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1142376 DQM71_RS10550 WP_000836914.1 2168562..2168942(-) (xcpV) [Acinetobacter baumannii strain NCTC13421]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098SJS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992

Multiple sequence alignment