Detailed information NTG1142375

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: DQM71_RS10545
• Genome accession: NZ_LS483472
• Coordinates: 2167861..2168562 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain NCTC13421
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2162861..2173562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM71_RS10515 (NCTC13421_02108)	-	2163168..2163611 (-)	444	WP_001246675.1	SRPBCC family protein	-
DQM71_RS10520 (NCTC13421_02109)	tadA	2163681..2164184 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
DQM71_RS10525 (NCTC13421_02110)	-	2164191..2165315 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
DQM71_RS10530 (NCTC13421_02111)	ung	2165312..2166025 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
DQM71_RS10535 (NCTC13421_02112)	-	2166076..2166672 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
DQM71_RS10540 (NCTC13421_02113)	gspK	2166902..2167861 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
DQM71_RS10545 (NCTC13421_02114)	xcpW	2167861..2168562 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
DQM71_RS10550 (NCTC13421_02115)	xcpV	2168562..2168942 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
DQM71_RS10555 (NCTC13421_02116)	-	2168932..2169486 (-)	555	WP_000841373.1	type II secretion system protein	-
DQM71_RS10560 (NCTC13421_02117)	-	2169496..2170104 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
DQM71_RS10565 (NCTC13421_02118)	-	2170142..2170915 (-)	774	WP_000497300.1	TatD family hydrolase	-
DQM71_RS10570 (NCTC13421_02119)	-	2170933..2171274 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
DQM71_RS10575 (NCTC13421_02120)	-	2171286..2172266 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
DQM71_RS10580 (NCTC13421_02121)	kdsB	2172278..2173039 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=1142375 DQM71_RS10545 WP_000594579.1 2167861..2168562(-) (xcpW) [Acinetobacter baumannii strain NCTC13421]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=1142375 DQM71_RS10545 WP_000594579.1 2167861..2168562(-) (xcpW) [Acinetobacter baumannii strain NCTC13421]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983