Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DQM71_RS01635 Genome accession   NZ_LS483472
Coordinates   345154..345972 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain NCTC13421     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340154..350972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM71_RS01600 - 340736..340866 (-) 131 Protein_302 hypothetical protein -
  DQM71_RS01605 (NCTC13421_00318) rpoZ 340905..341183 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DQM71_RS01610 (NCTC13421_00319) gmk 341256..341885 (-) 630 WP_000015937.1 guanylate kinase -
  DQM71_RS01615 (NCTC13421_00320) ispH 342008..342958 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DQM71_RS01620 (NCTC13421_00321) fimU 343128..343601 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DQM71_RS01625 (NCTC13421_00322) pilV 343595..344155 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  DQM71_RS01630 (NCTC13421_00323) pilW 344156..345157 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  DQM71_RS01635 (NCTC13421_00324) pilX 345154..345972 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DQM71_RS01640 (NCTC13421_00325) pilY1 345984..349838 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  DQM71_RS01645 (NCTC13421_00326) pilY2 349849..350331 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  DQM71_RS01650 (NCTC13421_00327) pilE 350328..350753 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1142363 DQM71_RS01635 WP_000149374.1 345154..345972(+) (pilX) [Acinetobacter baumannii strain NCTC13421]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1142363 DQM71_RS01635 WP_000149374.1 345154..345972(+) (pilX) [Acinetobacter baumannii strain NCTC13421]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment