Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPOKI673_RS07035 | Genome accession | NZ_CP006825 |
| Coordinates | 1453892..1454467 (-) | Length | 191 a.a. |
| NCBI ID | WP_025223304.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki673 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1448892..1459467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI673_RS08350 (HPOKI673_07350) | - | 1450587..1451144 (-) | 558 | WP_014535892.1 | restriction endonuclease subunit S | - |
| HPOKI673_RS08355 | - | 1451171..1451824 (-) | 654 | WP_025314184.1 | restriction endonuclease subunit S | - |
| HPOKI673_RS07030 (HPOKI673_07355) | - | 1451821..1453859 (-) | 2039 | Protein_1369 | class I SAM-dependent DNA methyltransferase | - |
| HPOKI673_RS07035 (HPOKI673_07360) | comFC | 1453892..1454467 (-) | 576 | WP_025223304.1 | ComF family protein | Machinery gene |
| HPOKI673_RS07040 (HPOKI673_07365) | tmk | 1454455..1455030 (-) | 576 | WP_025223305.1 | dTMP kinase | - |
| HPOKI673_RS07050 (HPOKI673_07370) | coaD | 1455212..1455715 (-) | 504 | WP_025223306.1 | pantetheine-phosphate adenylyltransferase | - |
| HPOKI673_RS07055 (HPOKI673_07375) | - | 1455715..1456278 (-) | 564 | WP_025223307.1 | UbiX family flavin prenyltransferase | - |
| HPOKI673_RS07060 (HPOKI673_07380) | flgA | 1456288..1456944 (-) | 657 | WP_025314185.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPOKI673_RS07065 (HPOKI673_07385) | uvrD | 1456941..1458986 (-) | 2046 | WP_025314186.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21319.95 Da Isoelectric Point: 9.4519
>NTDB_id=114233 HPOKI673_RS07035 WP_025223304.1 1453892..1454467(-) (comFC) [Helicobacter pylori oki673]
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=114233 HPOKI673_RS07035 WP_025223304.1 1453892..1454467(-) (comFC) [Helicobacter pylori oki673]
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
TAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
TAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |