Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOKI673_RS01705 Genome accession   NZ_CP006825
Coordinates   339123..339527 (+) Length   134 a.a.
NCBI ID   WP_025313692.1    Uniprot ID   -
Organism   Helicobacter pylori oki673     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334123..344527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI673_RS01670 (HPOKI673_01760) - 334296..335234 (-) 939 WP_025313688.1 tetraacyldisaccharide 4'-kinase -
  HPOKI673_RS01675 (HPOKI673_01765) - 335231..336013 (-) 783 WP_025313689.1 NAD+ synthase -
  HPOKI673_RS01685 ilvC 336262..337254 (+) 993 WP_025313690.1 ketol-acid reductoisomerase -
  HPOKI673_RS01690 (HPOKI673_01780) minD 337278..338084 (+) 807 WP_015643076.1 septum site-determining protein MinD -
  HPOKI673_RS01695 (HPOKI673_01785) minE 338081..338314 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPOKI673_RS01700 (HPOKI673_01790) dprA 338326..339126 (+) 801 WP_025313691.1 DNA-processing protein DprA Machinery gene
  HPOKI673_RS01705 (HPOKI673_01795) dprB 339123..339527 (+) 405 WP_025313692.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI673_RS01710 (HPOKI673_01800) - 339586..339909 (+) 324 WP_025313693.1 cysteine-rich Sel1 repeat protein -
  HPOKI673_RS01715 (HPOKI673_01805) - 340099..340437 (+) 339 WP_024948198.1 hypothetical protein -
  HPOKI673_RS01720 (HPOKI673_01810) - 340421..340987 (+) 567 WP_025287929.1 hypothetical protein -
  HPOKI673_RS01725 (HPOKI673_01820) - 341160..342041 (-) 882 WP_025313694.1 RluA family pseudouridine synthase -
  HPOKI673_RS01730 (HPOKI673_01825) recJ 342041..343591 (-) 1551 WP_025313695.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15265.79 Da        Isoelectric Point: 9.5494

>NTDB_id=114224 HPOKI673_RS01705 WP_025313692.1 339123..339527(+) (dprB) [Helicobacter pylori oki673]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLDHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=114224 HPOKI673_RS01705 WP_025313692.1 339123..339527(+) (dprB) [Helicobacter pylori oki673]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTTCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGATCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment