Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   DQN30_RS09255 Genome accession   NZ_LS483458
Coordinates   1906789..1907076 (+) Length   95 a.a.
NCBI ID   WP_172454076.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain NCTC10839     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1901789..1912076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN30_RS09235 (NCTC10839_01848) suhB 1903882..1904685 (-) 804 WP_005633301.1 inositol-1-monophosphatase -
  DQN30_RS09240 (NCTC10839_01849) comN 1904885..1905403 (+) 519 WP_046953321.1 type II secretion system protein Machinery gene
  DQN30_RS09245 (NCTC10839_01850) comO 1905397..1906113 (+) 717 WP_111697142.1 type II secretion system protein J Machinery gene
  DQN30_RS09250 (NCTC10839_01851) comP 1906113..1906796 (+) 684 WP_111697087.1 DUF2572 family protein Machinery gene
  DQN30_RS09255 (NCTC10839_01852) comQ 1906789..1907076 (+) 288 WP_172454076.1 DUF5374 domain-containing protein Machinery gene
  DQN30_RS09260 (NCTC10839_01853) recC 1907124..1910498 (+) 3375 WP_111697089.1 exodeoxyribonuclease V subunit gamma -
  DQN30_RS09265 (NCTC10839_01854) nrdR 1910561..1911010 (+) 450 WP_005627362.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10895.63 Da        Isoelectric Point: 9.7856

>NTDB_id=1142208 DQN30_RS09255 WP_172454076.1 1906789..1907076(+) (comQ) [Haemophilus haemolyticus strain NCTC10839]
MNKGMSLTTLLFSLALFSVLFIAFNQWTASQRKSAVKTYQDFQAIQVAENQAQRQFLGLSCEQLIQQNGLTFRVQCENER
VIVRYPMGEISIKTK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1142208 DQN30_RS09255 WP_172454076.1 1906789..1907076(+) (comQ) [Haemophilus haemolyticus strain NCTC10839]
ATGAATAAAGGCATGTCGCTCACTACCCTATTATTTTCTTTGGCTTTATTTAGCGTTTTATTTATTGCTTTCAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTGAAAACTTATCAAGATTTTCAGGCGATACAGGTTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGATTATCTTGTGAACAATTAATACAACAAAATGGCTTAACTTTTCGCGTTCAATGTGAAAACGAACGC
GTCATTGTGCGTTATCCTATGGGTGAAATTTCGATAAAAACTAAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

87.368

100

0.874

Multiple sequence alignment