Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DQN30_RS09240 Genome accession   NZ_LS483458
Coordinates   1904885..1905403 (+) Length   172 a.a.
NCBI ID   WP_046953321.1    Uniprot ID   A0A0M3G834
Organism   Haemophilus haemolyticus strain NCTC10839     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1899885..1910403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN30_RS09220 (NCTC10839_01845) nrfF 1900051..1901208 (-) 1158 WP_111697084.1 heme lyase NrfEFG subunit NrfF -
  DQN30_RS09225 (NCTC10839_01846) - 1901205..1901735 (-) 531 WP_111697085.1 DsbE family thiol:disulfide interchange protein -
  DQN30_RS09230 (NCTC10839_01847) nrfE 1901735..1903642 (-) 1908 WP_111697086.1 heme lyase NrfEFG subunit NrfE -
  DQN30_RS09235 (NCTC10839_01848) suhB 1903882..1904685 (-) 804 WP_005633301.1 inositol-1-monophosphatase -
  DQN30_RS09240 (NCTC10839_01849) comN 1904885..1905403 (+) 519 WP_046953321.1 type II secretion system protein Machinery gene
  DQN30_RS09245 (NCTC10839_01850) comO 1905397..1906113 (+) 717 WP_111697142.1 type II secretion system protein J Machinery gene
  DQN30_RS09250 (NCTC10839_01851) comP 1906113..1906796 (+) 684 WP_111697087.1 DUF2572 family protein Machinery gene
  DQN30_RS09255 (NCTC10839_01852) comQ 1906789..1907076 (+) 288 WP_172454076.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19851.95 Da        Isoelectric Point: 9.1777

>NTDB_id=1142205 DQN30_RS09240 WP_046953321.1 1904885..1905403(+) (comN) [Haemophilus haemolyticus strain NCTC10839]
MQKGVTLVELLIGLAIISIALSFAVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNDQTCDCLNPINCPKEAYAHFYYPYFPKKTMIQSHYIYPKEITRFYGARNTSVTRCFILQAENERTLFSFFNVGSIRL
KTNQAASACNQS

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1142205 DQN30_RS09240 WP_046953321.1 1904885..1905403(+) (comN) [Haemophilus haemolyticus strain NCTC10839]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGCATTGCGCTGAGTTTTGCCGTGCCATT
ATGGCAAACAGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAAGCAC
GGGCAGAAAATTCATCGGAAGTATGGTTTTTACTTATCAATCGTAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATGATCAAACTTGCGATTGTTTAAACCCAATAAACTGCCCGAAAGAGGCCTATGCTCATTTTTACTATCCTTA
TTTTCCTAAAAAAACGATGATTCAAAGCCATTATATTTATCCCAAAGAAATCACGAGGTTTTATGGTGCTCGTAATACGA
GTGTTACTCGTTGCTTTATTCTGCAAGCTGAAAATGAACGTACATTATTTTCATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACCAATCAAGCGGCTAGTGCATGCAATCAATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M3G834

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

91.765

98.837

0.907

Multiple sequence alignment