Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPOKI422_RS07190 | Genome accession | NZ_CP006824 |
| Coordinates | 1488085..1488660 (-) | Length | 191 a.a. |
| NCBI ID | WP_025276431.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki422 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1483085..1493660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI422_RS07180 (HPOKI422_07470) | - | 1485393..1485983 (-) | 591 | Protein_1384 | restriction endonuclease subunit S | - |
| HPOKI422_RS07185 (HPOKI422_07475) | - | 1486013..1488052 (-) | 2040 | WP_025310039.1 | class I SAM-dependent DNA methyltransferase | - |
| HPOKI422_RS07190 (HPOKI422_07480) | comFC | 1488085..1488660 (-) | 576 | WP_025276431.1 | ComF family protein | Machinery gene |
| HPOKI422_RS07195 (HPOKI422_07485) | tmk | 1488648..1489223 (-) | 576 | WP_025276432.1 | dTMP kinase | - |
| HPOKI422_RS07200 (HPOKI422_07490) | coaD | 1489225..1489698 (-) | 474 | WP_024118156.1 | pantetheine-phosphate adenylyltransferase | - |
| HPOKI422_RS07205 (HPOKI422_07495) | - | 1489698..1490261 (-) | 564 | WP_000780122.1 | UbiX family flavin prenyltransferase | - |
| HPOKI422_RS07210 (HPOKI422_07500) | flgA | 1490271..1490927 (-) | 657 | WP_025277183.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPOKI422_RS07215 (HPOKI422_07505) | uvrD | 1490924..1492969 (-) | 2046 | WP_025276435.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21325.82 Da Isoelectric Point: 8.8889
>NTDB_id=114219 HPOKI422_RS07190 WP_025276431.1 1488085..1488660(-) (comFC) [Helicobacter pylori oki422]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=114219 HPOKI422_RS07190 WP_025276431.1 1488085..1488660(-) (comFC) [Helicobacter pylori oki422]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGACGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCATTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGACGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCATTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.382 |
100 |
0.974 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |