Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HPOKI422_RS01885 Genome accession   NZ_CP006824
Coordinates   387211..388011 (+) Length   266 a.a.
NCBI ID   WP_025275690.1    Uniprot ID   -
Organism   Helicobacter pylori oki422     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 382211..393011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI422_RS01850 (HPOKI422_01940) pseH 382711..383253 (+) 543 WP_025275685.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HPOKI422_RS01855 (HPOKI422_01945) - 383186..384124 (-) 939 WP_025275686.1 tetraacyldisaccharide 4'-kinase -
  HPOKI422_RS01860 (HPOKI422_01950) - 384121..384903 (-) 783 WP_025275687.1 NAD+ synthase -
  HPOKI422_RS01870 ilvC 385152..386144 (+) 993 WP_025275688.1 ketol-acid reductoisomerase -
  HPOKI422_RS01875 (HPOKI422_01965) minD 386168..386974 (+) 807 WP_025276716.1 septum site-determining protein MinD -
  HPOKI422_RS01880 (HPOKI422_01970) minE 386971..387204 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPOKI422_RS01885 (HPOKI422_01975) dprA 387211..388011 (+) 801 WP_025275690.1 DNA-processing protein DprA Machinery gene
  HPOKI422_RS01890 (HPOKI422_01980) dprB 388008..388412 (+) 405 WP_025275691.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI422_RS01895 (HPOKI422_01985) - 388545..389435 (+) 891 WP_025366358.1 cysteine-rich Sel1 repeat protein -
  HPOKI422_RS01900 (HPOKI422_01990) - 389620..389958 (+) 339 WP_025275693.1 hypothetical protein -
  HPOKI422_RS01905 (HPOKI422_01995) - 389942..390502 (+) 561 WP_025275694.1 hypothetical protein -
  HPOKI422_RS01910 (HPOKI422_02000) - 390604..391485 (-) 882 WP_025275695.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29912.86 Da        Isoelectric Point: 8.5818

>NTDB_id=114213 HPOKI422_RS01885 WP_025275690.1 387211..388011(+) (dprA) [Helicobacter pylori oki422]
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLRAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMEDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=114213 HPOKI422_RS01885 WP_025275690.1 387211..388011(+) (dprA) [Helicobacter pylori oki422]
ATGAAAAGTAATTTCCAATACAGCACGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATATAAAGCTTTTGAGAGCACCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTGGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACAAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCTCAAAAATACCAAAAGCCATTATTTGTTTTACCCCAGCGCTTGAATGAAAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGGAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.744

100

0.977
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment