Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   DQL01_RS10145 Genome accession   NZ_LS483451
Coordinates   1894217..1895254 (-) Length   345 a.a.
NCBI ID   WP_061368781.1    Uniprot ID   A0AAQ3A0K8
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1889217..1900254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS10120 endA 1889835..1890659 (-) 825 WP_001036791.1 DNA-entry nuclease EndA Machinery gene
  DQL01_RS10125 - 1891016..1892269 (+) 1254 WP_061368780.1 IS110-like element ISSpn10 family transposase -
  DQL01_RS10130 - 1892441..1892629 (-) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  DQL01_RS10135 murA 1892622..1893905 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQL01_RS10140 - 1893929..1894159 (-) 231 WP_000250393.1 DUF1146 family protein -
  DQL01_RS10145 sepM 1894217..1895254 (-) 1038 WP_061368781.1 SepM family pheromone-processing serine protease Regulator
  DQL01_RS10150 coaD 1895238..1895726 (-) 489 WP_111702722.1 pantetheine-phosphate adenylyltransferase -
  DQL01_RS10155 rsmD 1895716..1896255 (-) 540 WP_050965571.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DQL01_RS10160 asnA 1896320..1897312 (-) 993 WP_050965570.1 aspartate--ammonia ligase -
  DQL01_RS10170 - 1897424..1898107 (-) 684 WP_050965569.1 Bax inhibitor-1 family protein -
  DQL01_RS10175 - 1898163..1898903 (-) 741 WP_111702723.1 TrmH family RNA methyltransferase -
  DQL01_RS10180 - 1898937..1899215 (+) 279 WP_050314492.1 acylphosphatase -
  DQL01_RS10185 yidC 1899293..1900219 (+) 927 WP_111702724.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37542.55 Da        Isoelectric Point: 4.9480

>NTDB_id=1142085 DQL01_RS10145 WP_061368781.1 1894217..1895254(-) (sepM) [Streptococcus pneumoniae strain 4041STDY6836166]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMARYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIANPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1142085 DQL01_RS10145 WP_061368781.1 1894217..1895254(-) (sepM) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGAAAAAAAAGATTAGATGGCCCTTGTATGTCATTGCGGCCTTGATTGTGACCTTCTTGGCATTTGTGGTGCCTTTGCC
CTACTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCTACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAGGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGGAAGATTATCACCTTGGAAAATGGAAAAAATGGGATTGGAATCGGCTTGATTGATCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGCCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTAACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591


Multiple sequence alignment