Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL01_RS02895 Genome accession   NZ_LS483451
Coordinates   530901..531632 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 525901..536632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS02870 dnaK 526029..527852 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  DQL01_RS02875 - 527863..528132 (+) 270 WP_223842239.1 tRNA (guanine-N7)-methyltransferase -
  DQL01_RS02880 dnaJ 528610..529746 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  DQL01_RS02885 - 530126..530413 (-) 288 WP_000777760.1 hypothetical protein -
  DQL01_RS02890 - 530423..530833 (-) 411 WP_001278301.1 HIT family protein -
  DQL01_RS02895 pptA 530901..531632 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  DQL01_RS02900 - 531629..532678 (+) 1050 WP_000653771.1 ABC transporter permease -
  DQL01_RS02905 - 532846..533175 (-) 330 WP_000132575.1 hypothetical protein -
  DQL01_RS02910 - 533451..533789 (+) 339 WP_061390077.1 LytTR family DNA-binding domain-containing protein -
  DQL01_RS02915 comE/blpR 533794..534531 (+) 738 WP_061390076.1 response regulator transcription factor Regulator
  DQL01_RS02920 - 534545..535885 (+) 1341 WP_001017646.1 sensor histidine kinase -
  DQL01_RS02925 blpC 535956..536084 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=1142042 DQL01_RS02895 WP_000889919.1 530901..531632(+) (pptA) [Streptococcus pneumoniae strain 4041STDY6836166]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1142042 DQL01_RS02895 WP_000889919.1 530901..531632(+) (pptA) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment