Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQL12_RS06455 Genome accession   NZ_LS483450
Coordinates   1212327..1213136 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 4041STDY6583227     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207327..1218136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL12_RS06440 - 1209792..1211663 (-) 1872 WP_000150986.1 Eco57I restriction-modification methylase domain-containing protein -
  DQL12_RS06445 - 1211738..1211992 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE family toxin -
  DQL12_RS06450 relB 1211994..1212236 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  DQL12_RS06455 vicX 1212327..1213136 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DQL12_RS06460 micB 1213138..1214487 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQL12_RS06465 micA 1214480..1215184 (-) 705 WP_000722076.1 response regulator YycF Regulator
  DQL12_RS06470 mutY 1215239..1216414 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  DQL12_RS12480 - 1216511..1216636 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=1141978 DQL12_RS06455 WP_001289493.1 1212327..1213136(-) (vicX) [Streptococcus pneumoniae strain 4041STDY6583227]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1141978 DQL12_RS06455 WP_001289493.1 1212327..1213136(-) (vicX) [Streptococcus pneumoniae strain 4041STDY6583227]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTATCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment