Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL12_RS02625 Genome accession   NZ_LS483450
Coordinates   489100..489831 (+) Length   243 a.a.
NCBI ID   WP_000889924.1    Uniprot ID   A0A0H2UNS3
Organism   Streptococcus pneumoniae strain 4041STDY6583227     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 484100..494831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL12_RS02605 dnaJ 486455..487591 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  DQL12_RS02615 - 488325..488612 (-) 288 WP_000777760.1 hypothetical protein -
  DQL12_RS02620 - 488622..489032 (-) 411 WP_001278301.1 HIT family protein -
  DQL12_RS02625 pptA 489100..489831 (+) 732 WP_000889924.1 ABC transporter ATP-binding protein Regulator
  DQL12_RS02630 - 489828..490877 (+) 1050 WP_000653779.1 ABC transporter permease -
  DQL12_RS02640 - 491045..491374 (-) 330 WP_000132572.1 hypothetical protein -
  DQL12_RS02645 - 491650..491988 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  DQL12_RS02650 comE/blpR 491993..492730 (+) 738 WP_001219120.1 response regulator transcription factor Regulator
  DQL12_RS02655 - 492744..494084 (+) 1341 WP_001017646.1 sensor histidine kinase -
  DQL12_RS02660 blpC 494155..494283 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27042.52 Da        Isoelectric Point: 4.7792

>NTDB_id=1141964 DQL12_RS02625 WP_000889924.1 489100..489831(+) (pptA) [Streptococcus pneumoniae strain 4041STDY6583227]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRSKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1141964 DQL12_RS02625 WP_000889924.1 489100..489831(+) (pptA) [Streptococcus pneumoniae strain 4041STDY6583227]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTTCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment