Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQK98_RS06080 Genome accession   NZ_LS483449
Coordinates   1162818..1163627 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 4041STDY6836170     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157818..1168627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQK98_RS06060 - 1160164..1161150 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  DQK98_RS06065 - 1161439..1162182 (-) 744 Protein_1148 potassium channel family protein -
  DQK98_RS06070 - 1162229..1162483 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE family toxin -
  DQK98_RS06075 relB 1162485..1162727 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  DQK98_RS06080 vicX 1162818..1163627 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DQK98_RS06085 micB 1163629..1164978 (-) 1350 WP_001861620.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQK98_RS06090 micA 1164971..1165675 (-) 705 WP_000722076.1 response regulator YycF Regulator
  DQK98_RS06095 mutY 1165731..1166906 (-) 1176 WP_050212015.1 A/G-specific adenine glycosylase -
  DQK98_RS12150 - 1167003..1167128 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=1141900 DQK98_RS06080 WP_001289493.1 1162818..1163627(-) (vicX) [Streptococcus pneumoniae strain 4041STDY6836170]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1141900 DQK98_RS06080 WP_001289493.1 1162818..1163627(-) (vicX) [Streptococcus pneumoniae strain 4041STDY6836170]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAAATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment