Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPOKI154_RS07080 | Genome accession | NZ_CP006823 |
| Coordinates | 1458531..1459106 (-) | Length | 191 a.a. |
| NCBI ID | WP_025223304.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki154 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1453531..1464106
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI154_RS08835 (HPOKI154_07360) | - | 1455226..1455855 (-) | 630 | WP_025367068.1 | restriction endonuclease subunit S | - |
| HPOKI154_RS08840 | - | 1455827..1456462 (-) | 636 | WP_025367069.1 | restriction endonuclease subunit S | - |
| HPOKI154_RS07075 (HPOKI154_07365) | - | 1456459..1458498 (-) | 2040 | WP_025367070.1 | class I SAM-dependent DNA methyltransferase | - |
| HPOKI154_RS07080 (HPOKI154_07370) | comFC | 1458531..1459106 (-) | 576 | WP_025223304.1 | ComF family protein | Machinery gene |
| HPOKI154_RS07085 (HPOKI154_07375) | tmk | 1459094..1459669 (-) | 576 | WP_025223305.1 | dTMP kinase | - |
| HPOKI154_RS07095 (HPOKI154_07380) | coaD | 1459851..1460354 (-) | 504 | WP_025367071.1 | pantetheine-phosphate adenylyltransferase | - |
| HPOKI154_RS07100 (HPOKI154_07385) | - | 1460354..1460917 (-) | 564 | WP_025223307.1 | UbiX family flavin prenyltransferase | - |
| HPOKI154_RS07105 (HPOKI154_07390) | flgA | 1460927..1461583 (-) | 657 | WP_025367072.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPOKI154_RS07110 (HPOKI154_07395) | uvrD | 1461580..1463625 (-) | 2046 | WP_025367073.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21319.95 Da Isoelectric Point: 9.4519
>NTDB_id=114190 HPOKI154_RS07080 WP_025223304.1 1458531..1459106(-) (comFC) [Helicobacter pylori oki154]
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=114190 HPOKI154_RS07080 WP_025223304.1 1458531..1459106(-) (comFC) [Helicobacter pylori oki154]
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
TAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
TAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |