Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQK98_RS02610 Genome accession   NZ_LS483449
Coordinates   496880..497611 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836170     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 491880..502611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQK98_RS02585 - 493766..494041 (+) 276 WP_000386177.1 hypothetical protein -
  DQK98_RS02590 dnaJ 494246..495382 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  DQK98_RS11285 - 495704..495943 (-) 240 WP_001813906.1 hypothetical protein -
  DQK98_RS02600 - 496105..496392 (-) 288 WP_000777760.1 hypothetical protein -
  DQK98_RS02605 - 496402..496812 (-) 411 WP_001278301.1 HIT family protein -
  DQK98_RS02610 pptA 496880..497611 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  DQK98_RS02615 - 497608..498657 (+) 1050 WP_000653771.1 ABC transporter permease -
  DQK98_RS02620 - 498825..499154 (-) 330 WP_000132572.1 hypothetical protein -
  DQK98_RS02625 - 499431..499769 (+) 339 WP_000682132.1 LytTR family DNA-binding domain-containing protein -
  DQK98_RS02630 comE/blpR 499774..500511 (+) 738 WP_001219146.1 response regulator transcription factor Regulator
  DQK98_RS02635 - 500525..501865 (+) 1341 WP_001099895.1 sensor histidine kinase -
  DQK98_RS02640 blpC 501909..502064 (-) 156 WP_044791640.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=1141887 DQK98_RS02610 WP_000889923.1 496880..497611(+) (pptA) [Streptococcus pneumoniae strain 4041STDY6836170]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1141887 DQK98_RS02610 WP_000889923.1 496880..497611(+) (pptA) [Streptococcus pneumoniae strain 4041STDY6836170]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGCTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCATGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment