Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   DQK99_RS02140 Genome accession   NZ_LS483448
Coordinates   386494..387183 (+) Length   229 a.a.
NCBI ID   WP_000518008.1    Uniprot ID   A0A0B7KUQ5
Organism   Streptococcus pneumoniae strain 4041STDY6836167     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 381494..392183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQK99_RS02115 gpsB 381591..381932 (+) 342 WP_000200645.1 cell division regulator GpsB -
  DQK99_RS02125 - 382418..383575 (+) 1158 WP_000711414.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  DQK99_RS02130 mapZ 383588..384982 (+) 1395 WP_000039255.1 cell division site-positioning protein MapZ -
  DQK99_RS02135 gndA 385058..386482 (+) 1425 WP_000158793.1 NADP-dependent phosphogluconate dehydrogenase -
  DQK99_RS02140 covR 386494..387183 (+) 690 WP_000518008.1 response regulator transcription factor Regulator
  DQK99_RS02145 cbpJ 387282..388280 (+) 999 WP_000771053.1 choline-binding protein CbpJ -
  DQK99_RS02150 - 388397..389629 (-) 1233 WP_000765684.1 MFS transporter -
  DQK99_RS02155 - 389788..390090 (-) 303 WP_001816908.1 hypothetical protein -
  DQK99_RS02160 - 390158..390517 (-) 360 Protein_415 lantibiotic-modifying protein -
  DQK99_RS12490 - 391180..391509 (+) 330 WP_000619581.1 transposase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26914.21 Da        Isoelectric Point: 6.9836

>NTDB_id=1141807 DQK99_RS02140 WP_000518008.1 386494..387183(+) (covR) [Streptococcus pneumoniae strain 4041STDY6836167]
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMIL
DHWEDLQEELEVVQRFAVSYIYKPVFIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1141807 DQK99_RS02140 WP_000518008.1 386494..387183(+) (covR) [Streptococcus pneumoniae strain 4041STDY6836167]
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTTTAAGTTTGGAACTCCAGAAAGAGCAGTA
TCGGGTTGATCTGGTAGAGGAGGGGCAAAAAGCCCTTTCCATGGCTCTTCAGACAGACTATGATTTGATTTTATTGAACG
TTAATCTGGGAGATATGATGGCTCAGGATTTTGCAGAAAAATTGAGTCGAACTAAACCTGCCTCAGTCATCATGATTTTA
GATCATTGGGAAGACTTGCAAGAAGAGCTGGAAGTTGTTCAGCGTTTTGCAGTTTCATACATCTATAAGCCAGTCTTTAT
CGAAAATCTGGTAGCGCGTATTTCGGCAATCTTCCGAGGTCGGGACTTCATTGATCAACACTGCAGTCTGATGAAAGTTC
CAAGGACCTACCGCAATCTTAGGATAGATGTTGAACATCACACGGTTTATCGTGGTGAAGAGATGATTGCTCTGACCCGC
CGTGAGTATGACCTTTTGGCGACACTTATGGGAAGCAAGAAAGTATTGACTCGTGAGCAATTGTTGGAAAGTGTTTGGAA
GTATGAAAGTGCGACCGAGACAAATATCGTAGATGTCTATATCCGCTATCTACGGAGCAAGCTTGATGTTAAAGGCCAAA
AAAGCTACATTAAAACCGTGCGTGGTGTTGGTTACACCATGCAAGAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-226)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7KUQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.261

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.522

100

0.467

Multiple sequence alignment