Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOKI154_RS01715 Genome accession   NZ_CP006823
Coordinates   339491..339895 (+) Length   134 a.a.
NCBI ID   WP_025313692.1    Uniprot ID   -
Organism   Helicobacter pylori oki154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334491..344895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI154_RS01680 (HPOKI154_01770) - 334664..335602 (-) 939 WP_025366750.1 tetraacyldisaccharide 4'-kinase -
  HPOKI154_RS01685 (HPOKI154_01775) - 335599..336381 (-) 783 WP_015428726.1 NAD+ synthase -
  HPOKI154_RS01695 ilvC 336630..337622 (+) 993 WP_025366751.1 ketol-acid reductoisomerase -
  HPOKI154_RS01700 (HPOKI154_01790) minD 337646..338452 (+) 807 WP_015643076.1 septum site-determining protein MinD -
  HPOKI154_RS01705 (HPOKI154_01795) minE 338449..338682 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPOKI154_RS01710 (HPOKI154_01800) dprA 338694..339494 (+) 801 WP_025366752.1 DNA-processing protein DprA Machinery gene
  HPOKI154_RS01715 (HPOKI154_01805) dprB 339491..339895 (+) 405 WP_025313692.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI154_RS01720 (HPOKI154_01810) - 339954..340385 (+) 432 WP_038416393.1 tetratricopeptide repeat protein -
  HPOKI154_RS01725 (HPOKI154_01815) - 340575..340913 (+) 339 WP_024948198.1 hypothetical protein -
  HPOKI154_RS01730 (HPOKI154_01820) - 340897..341463 (+) 567 WP_025287929.1 hypothetical protein -
  HPOKI154_RS01735 (HPOKI154_01830) - 341636..342517 (-) 882 WP_025366753.1 RluA family pseudouridine synthase -
  HPOKI154_RS01740 (HPOKI154_01835) recJ 342517..344067 (-) 1551 WP_025366754.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15265.79 Da        Isoelectric Point: 9.5494

>NTDB_id=114180 HPOKI154_RS01715 WP_025313692.1 339491..339895(+) (dprB) [Helicobacter pylori oki154]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLDHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=114180 HPOKI154_RS01715 WP_025313692.1 339491..339895(+) (dprB) [Helicobacter pylori oki154]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTTCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGATCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment