Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | DQN48_RS05960 | Genome accession | NZ_LS483446 |
| Coordinates | 1251056..1251454 (+) | Length | 132 a.a. |
| NCBI ID | WP_041913181.1 | Uniprot ID | - |
| Organism | Helicobacter mustelae strain NCTC12198 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1246056..1256454
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN48_RS05935 (NCTC12198_01150) | - | 1246379..1246777 (+) | 399 | WP_013023448.1 | hypothetical protein | - |
| DQN48_RS05940 (NCTC12198_01151) | - | 1246785..1249001 (+) | 2217 | WP_013023449.1 | endonuclease MutS2 | - |
| DQN48_RS05945 (NCTC12198_01152) | minD | 1249265..1250059 (+) | 795 | WP_013023450.1 | septum site-determining protein MinD | - |
| DQN48_RS05950 (NCTC12198_01153) | minE | 1250056..1250286 (+) | 231 | WP_013023451.1 | cell division topological specificity factor MinE | - |
| DQN48_RS05955 (NCTC12198_01154) | dprA | 1250286..1251059 (+) | 774 | WP_013023452.1 | DNA-processing protein DprA | Machinery gene |
| DQN48_RS05960 (NCTC12198_01155) | dprB | 1251056..1251454 (+) | 399 | WP_041913181.1 | Holliday junction resolvase RuvX | Machinery gene |
| DQN48_RS05965 (NCTC12198_01156) | - | 1251561..1252565 (-) | 1005 | WP_013023454.1 | glycosyltransferase family 4 protein | - |
| DQN48_RS05970 (NCTC12198_01157) | - | 1252562..1253503 (-) | 942 | WP_013023455.1 | type IV pilus twitching motility protein PilT | - |
| DQN48_RS05975 (NCTC12198_01158) | - | 1253487..1253861 (-) | 375 | WP_013023456.1 | hypothetical protein | - |
| DQN48_RS05980 (NCTC12198_01159) | - | 1253858..1254268 (-) | 411 | WP_013023457.1 | periplasmic protein | - |
| DQN48_RS05985 (NCTC12198_01160) | - | 1254268..1254519 (-) | 252 | WP_013023458.1 | hypothetical protein | - |
| DQN48_RS05990 (NCTC12198_01161) | - | 1254545..1255114 (-) | 570 | WP_013023459.1 | hypothetical protein | - |
| DQN48_RS05995 (NCTC12198_01162) | - | 1255111..1255659 (-) | 549 | WP_013023460.1 | hypothetical protein | - |
| DQN48_RS06000 (NCTC12198_01164) | - | 1255818..1256024 (-) | 207 | WP_013023461.1 | DUF4006 family protein | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 14828.38 Da Isoelectric Point: 10.3194
>NTDB_id=1141793 DQN48_RS05960 WP_041913181.1 1251056..1251454(+) (dprB) [Helicobacter mustelae strain NCTC12198]
MMIACDIGLKRIGIAGLIEGIILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSGNAEDTKRRIMFFVSLLETSA
KILYVNEDCTSLEARQDLSHLKKQRRQNAQKNGRIDSLAACKILQRYLQKNP
MMIACDIGLKRIGIAGLIEGIILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSGNAEDTKRRIMFFVSLLETSA
KILYVNEDCTSLEARQDLSHLKKQRRQNAQKNGRIDSLAACKILQRYLQKNP
Nucleotide
Download Length: 399 bp
>NTDB_id=1141793 DQN48_RS05960 WP_041913181.1 1251056..1251454(+) (dprB) [Helicobacter mustelae strain NCTC12198]
GTGATGATCGCATGCGACATTGGTTTAAAACGCATCGGGATAGCAGGACTCATTGAGGGGATTATCCTGCCCATGGAGCC
TATATTGCGAACAAATCGCAATCAAGCAGCAAGCGATCTCTCCAAGCTCCTCAAAGAAAAAAATGCTCACACCCTCATTG
TGGGAATCCCGCAATCTGGCAATGCAGAAGACACCAAAAGGCGAATCATGTTTTTTGTCTCCTTGCTAGAGACCTCTGCA
AAAATCCTCTATGTCAATGAGGACTGCACAAGCCTTGAGGCACGCCAGGATCTCTCTCATCTCAAAAAACAAAGGCGCCA
AAATGCCCAAAAAAATGGGAGAATTGACTCTCTTGCAGCCTGCAAAATCCTGCAGCGCTATCTCCAAAAAAACCCATGA
GTGATGATCGCATGCGACATTGGTTTAAAACGCATCGGGATAGCAGGACTCATTGAGGGGATTATCCTGCCCATGGAGCC
TATATTGCGAACAAATCGCAATCAAGCAGCAAGCGATCTCTCCAAGCTCCTCAAAGAAAAAAATGCTCACACCCTCATTG
TGGGAATCCCGCAATCTGGCAATGCAGAAGACACCAAAAGGCGAATCATGTTTTTTGTCTCCTTGCTAGAGACCTCTGCA
AAAATCCTCTATGTCAATGAGGACTGCACAAGCCTTGAGGCACGCCAGGATCTCTCTCATCTCAAAAAACAAAGGCGCCA
AAATGCCCAAAAAAATGGGAGAATTGACTCTCTTGCAGCCTGCAAAATCCTGCAGCGCTATCTCCAAAAAAACCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
54.615 |
98.485 |
0.538 |