Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOKI128_RS01710 Genome accession   NZ_CP006822
Coordinates   338040..338444 (+) Length   134 a.a.
NCBI ID   WP_025287926.1    Uniprot ID   -
Organism   Helicobacter pylori oki128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 333040..343444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI128_RS01675 (HPOKI128_01755) - 333218..334156 (-) 939 WP_025287922.1 tetraacyldisaccharide 4'-kinase -
  HPOKI128_RS01680 (HPOKI128_01760) - 334153..334935 (-) 783 WP_025287923.1 NAD+ synthase -
  HPOKI128_RS01690 ilvC 335184..336176 (+) 993 WP_025287924.1 ketol-acid reductoisomerase -
  HPOKI128_RS01695 (HPOKI128_01775) minD 336195..337001 (+) 807 WP_001019097.1 septum site-determining protein MinD -
  HPOKI128_RS01700 (HPOKI128_01780) minE 336998..337231 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPOKI128_RS01705 (HPOKI128_01785) dprA 337243..338043 (+) 801 WP_025287925.1 DNA-processing protein DprA Machinery gene
  HPOKI128_RS01710 (HPOKI128_01790) dprB 338040..338444 (+) 405 WP_025287926.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI128_RS01715 (HPOKI128_01795) - 338503..338934 (+) 432 WP_038416393.1 tetratricopeptide repeat protein -
  HPOKI128_RS01720 (HPOKI128_01800) - 339124..339462 (+) 339 WP_025287928.1 hypothetical protein -
  HPOKI128_RS01725 (HPOKI128_01805) - 339446..340012 (+) 567 WP_025287929.1 hypothetical protein -
  HPOKI128_RS01730 (HPOKI128_01815) - 340185..341066 (-) 882 WP_025222566.1 RluA family pseudouridine synthase -
  HPOKI128_RS01735 (HPOKI128_01820) recJ 341066..342580 (-) 1515 WP_235180481.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15279.82 Da        Isoelectric Point: 9.5494

>NTDB_id=114160 HPOKI128_RS01710 WP_025287926.1 338040..338444(+) (dprB) [Helicobacter pylori oki128]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=114160 HPOKI128_RS01710 WP_025287926.1 338040..338444(+) (dprB) [Helicobacter pylori oki128]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTTCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948

Multiple sequence alignment