Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQN27_RS06130 Genome accession   NZ_LS483439
Coordinates   1289594..1291363 (-) Length   589 a.a.
NCBI ID   WP_012243168.1    Uniprot ID   A0A553IG76
Organism   Acholeplasma laidlawii strain NCTC10116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284594..1296363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN27_RS06110 (NCTC10116_01241) - 1284996..1285787 (-) 792 WP_012243164.1 ABC transporter permease -
  DQN27_RS06115 (NCTC10116_01242) - 1285789..1286613 (-) 825 WP_012243165.1 ABC transporter permease -
  DQN27_RS06120 (NCTC10116_01243) - 1286594..1287589 (-) 996 WP_041634969.1 ATP-binding cassette domain-containing protein -
  DQN27_RS06125 (NCTC10116_01244) rcrQ 1287742..1289601 (-) 1860 WP_012243167.1 ABC transporter ATP-binding protein Regulator
  DQN27_RS06130 (NCTC10116_01245) rcrP 1289594..1291363 (-) 1770 WP_012243168.1 ABC transporter ATP-binding protein Regulator
  DQN27_RS06135 (NCTC10116_01246) - 1291366..1291794 (-) 429 WP_041634315.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQN27_RS06140 (NCTC10116_01247) - 1292007..1292321 (-) 315 WP_012243170.1 hypothetical protein -
  DQN27_RS06145 (NCTC10116_01248) - 1292520..1295063 (+) 2544 WP_041634319.1 lamin tail domain-containing protein -
  DQN27_RS06150 (NCTC10116_01249) - 1295116..1295787 (-) 672 WP_012243172.1 DUF2161 domain-containing phosphodiesterase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65889.06 Da        Isoelectric Point: 8.8174

>NTDB_id=1141578 DQN27_RS06130 WP_012243168.1 1289594..1291363(-) (rcrP) [Acholeplasma laidlawii strain NCTC10116]
MIKILKHITLKEWLWILFSLVLIMGQVYLELELPQYMLNISRMALGENAVLMDIVLEGLKMLGLAFGSLLSAVVVGLIFA
RLSSRFGARLRSKIFEKTTEFSMEEINNFSTPSLITRSTNDINQVQMIISLGAQIILKAPILAIWSIYKISDSRWEFTLS
TVVAILVISVVLLMVIFLAMPRFKKIQKNTDELNKHSRENLSGLRVIKAYNAEKFQKDKINSISDTLMNDSLFAGRIMSF
MMPTMTLVMSGVGLAIYWIGGGLIGDIALDLTNPMVGLLARMEVYGPMIIFSQYAMQVIMAFMMLVMIFVIMPRAQVSAN
RILEVLQTKTKLTDGKLNLQEQVESLTFENVSFKYPDASDLVLENVSFSANKGDVVAIIGATGAGKTTLINLIPRFYDVT
EGQIKINNVNIKDYNQKDLRSKIGYISQQAFLFSGTIQTNVNYGVDNDKTVQDALHIAQASDFVLSLEEQEKSRVSQAGK
NFSGGQKQRLSIARAIQKEADILIFDDSFSALDYQTDRNLRNALKSNLKNHITLIVAQRIGTIKNADLILVIDEGKIVGS
GKHETLIKDNHVYREIALSQLSEEEINHG

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1141578 DQN27_RS06130 WP_012243168.1 1289594..1291363(-) (rcrP) [Acholeplasma laidlawii strain NCTC10116]
ATGATTAAAATACTTAAACATATTACATTAAAAGAATGGTTGTGGATATTATTTTCACTTGTCCTTATTATGGGGCAAGT
CTATTTAGAATTAGAACTACCACAATACATGCTTAATATTTCAAGGATGGCACTAGGTGAAAATGCAGTGCTTATGGATA
TTGTATTAGAAGGATTAAAAATGTTAGGACTTGCATTTGGTAGTTTATTATCTGCAGTTGTTGTAGGTTTAATCTTTGCT
AGACTCTCATCAAGATTTGGTGCTAGACTACGTTCTAAGATTTTTGAAAAGACAACAGAGTTTTCAATGGAAGAGATAAA
TAACTTTTCAACACCTAGTTTAATTACAAGATCTACAAACGATATTAACCAAGTTCAGATGATTATCTCACTTGGTGCTC
AAATCATCTTAAAAGCGCCTATTTTAGCGATTTGGAGTATATATAAGATATCTGACTCTAGATGGGAATTTACATTATCA
ACAGTTGTTGCTATTTTAGTTATTAGTGTTGTCTTATTAATGGTCATCTTCCTTGCAATGCCAAGATTTAAAAAAATTCA
AAAAAATACAGATGAACTCAATAAGCACTCAAGAGAAAACTTATCAGGCTTACGAGTTATAAAAGCTTATAATGCTGAAA
AGTTTCAAAAAGATAAGATCAACAGTATTAGTGATACTTTAATGAATGACAGTTTGTTTGCAGGTAGAATCATGAGTTTC
ATGATGCCTACTATGACACTCGTTATGTCAGGTGTGGGGCTTGCGATCTACTGGATTGGTGGCGGATTAATTGGTGATAT
CGCACTAGATCTTACAAATCCAATGGTTGGATTATTAGCTCGTATGGAAGTATATGGGCCAATGATTATTTTCTCACAAT
ATGCAATGCAAGTCATTATGGCATTTATGATGCTCGTTATGATATTTGTTATTATGCCACGTGCTCAAGTATCAGCAAAC
CGTATTTTAGAAGTGCTACAAACTAAAACTAAGCTTACAGATGGTAAGTTAAACTTACAAGAACAAGTAGAAAGTTTAAC
TTTTGAAAATGTGAGTTTTAAATATCCCGATGCATCTGATTTAGTTCTTGAAAATGTATCCTTTAGTGCAAATAAGGGTG
ATGTAGTTGCAATTATCGGTGCTACAGGTGCTGGTAAAACAACATTAATCAACTTGATTCCTAGATTTTATGATGTTACA
GAGGGTCAAATTAAAATCAATAATGTAAATATTAAAGATTACAATCAAAAAGATTTAAGATCAAAAATTGGCTATATTTC
ACAACAAGCTTTTCTGTTTAGTGGAACGATTCAAACAAACGTTAACTATGGTGTGGATAATGATAAAACAGTTCAAGATG
CACTTCACATTGCACAGGCAAGTGACTTTGTTTTATCGTTAGAAGAACAAGAAAAATCACGTGTATCTCAAGCAGGTAAA
AACTTCTCTGGTGGACAAAAACAAAGATTATCGATTGCAAGAGCAATCCAAAAAGAAGCAGATATCTTAATTTTTGATGA
TAGTTTTTCTGCACTTGATTATCAAACAGATAGAAATTTAAGAAATGCATTAAAATCAAATCTTAAAAATCACATCACAT
TAATTGTTGCTCAAAGAATTGGAACGATTAAGAATGCGGATTTAATCTTAGTAATTGATGAAGGTAAGATTGTAGGTTCA
GGAAAACATGAAACATTAATTAAAGATAATCATGTTTACCGCGAGATTGCATTATCACAATTATCAGAGGAGGAAATCAA
TCATGGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(363-508)

ABC transporter transmembrane region (ABC_membrane)

(60-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A553IG76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.01

100

0.48

Multiple sequence alignment