Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQN27_RS06125 Genome accession   NZ_LS483439
Coordinates   1287742..1289601 (-) Length   619 a.a.
NCBI ID   WP_012243167.1    Uniprot ID   A0A553IG99
Organism   Acholeplasma laidlawii strain NCTC10116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282742..1294601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN27_RS06100 (NCTC10116_01239) - 1283873..1284304 (-) 432 WP_041634968.1 VOC family protein -
  DQN27_RS06105 (NCTC10116_01240) - 1284332..1284895 (-) 564 WP_012243163.1 DUF2179 domain-containing protein -
  DQN27_RS06110 (NCTC10116_01241) - 1284996..1285787 (-) 792 WP_012243164.1 ABC transporter permease -
  DQN27_RS06115 (NCTC10116_01242) - 1285789..1286613 (-) 825 WP_012243165.1 ABC transporter permease -
  DQN27_RS06120 (NCTC10116_01243) - 1286594..1287589 (-) 996 WP_041634969.1 ATP-binding cassette domain-containing protein -
  DQN27_RS06125 (NCTC10116_01244) rcrQ 1287742..1289601 (-) 1860 WP_012243167.1 ABC transporter ATP-binding protein Regulator
  DQN27_RS06130 (NCTC10116_01245) rcrP 1289594..1291363 (-) 1770 WP_012243168.1 ABC transporter ATP-binding protein Regulator
  DQN27_RS06135 (NCTC10116_01246) - 1291366..1291794 (-) 429 WP_041634315.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQN27_RS06140 (NCTC10116_01247) - 1292007..1292321 (-) 315 WP_012243170.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 69328.23 Da        Isoelectric Point: 6.3030

>NTDB_id=1141577 DQN27_RS06125 WP_012243167.1 1287742..1289601(-) (rcrQ) [Acholeplasma laidlawii strain NCTC10116]
MAKEKNHDNNPAPKNPGFGHGKMGGGQKAKNFKKSFKQMLSYAKEYHVLIGIAFVLAFIGTVLNIIGPDLIKQMTNEITK
AVDFRPDQGIFPSETINMELIGRIGLTLVIFYSLGFIFNYIQGFMLTTVSQRISNRFRRDIATKMNKIPFKYYDTTNIGD
ILSRMTNDVDMVGQTYQQSFGSLVTAVTMFIGSIVMMFITNWILALTAIGASLIGFVFMMLIVTRSQKYFKTFQSKLGAL
NGHIEEIYTGHTNVKAYVAEPKEVETFNQMNEDLYQSGWKSQFLSGIMMPLMGFVGNLGYVAVIIVGAILVSSGKTEFGV
ILAFLIYVRLFTQPLSTMAQAMTSLQSGTAAAERVFEFLEEKELEDESHKETKLTNVKGEVTFDHVKFGYDEEKLVINDF
SAKIKPGQKVAIVGPTGAGKTTLVNLLMRFYELNEGRILIDGVDIQDITRENVHNLFGMVLQDTWLFEGSVYDNLVFTNK
DVTREQVESICKTVGIHFFINTLPEKYDTILTDKVNLSAGQKQLLTIARAMILNAPLLIFDEATSSIDTRTEVLIQKAMD
ELMTGRTSFVIAHRLSTIRNADLILVMKDGDIVESGNHETLLGQDGFYAELYNSQFDPK

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=1141577 DQN27_RS06125 WP_012243167.1 1287742..1289601(-) (rcrQ) [Acholeplasma laidlawii strain NCTC10116]
ATGGCTAAAGAAAAAAATCACGATAACAACCCAGCACCTAAAAATCCTGGCTTTGGTCATGGAAAAATGGGCGGAGGTCA
AAAGGCTAAAAACTTTAAAAAGTCCTTTAAACAAATGCTTAGTTATGCAAAAGAATACCATGTATTAATCGGTATTGCCT
TTGTTCTAGCATTTATTGGTACCGTATTAAATATTATTGGTCCAGACTTAATTAAACAAATGACCAATGAAATTACAAAA
GCAGTGGACTTTAGACCTGATCAAGGCATTTTCCCAAGTGAAACCATTAATATGGAACTTATTGGTCGTATCGGTCTAAC
CCTTGTAATATTCTATAGTTTAGGATTTATCTTTAACTATATTCAAGGCTTTATGCTCACAACCGTATCTCAAAGAATAT
CCAATCGCTTTAGAAGAGATATCGCAACTAAAATGAATAAAATACCTTTTAAATATTATGACACAACAAACATTGGTGAC
ATCTTAAGTCGTATGACCAACGATGTGGACATGGTTGGTCAAACCTACCAACAATCATTTGGTTCATTAGTGACTGCAGT
GACCATGTTTATTGGTTCGATTGTCATGATGTTTATTACTAACTGGATTCTTGCATTAACTGCAATTGGTGCATCCTTAA
TTGGATTTGTCTTTATGATGTTAATTGTAACAAGATCTCAAAAATACTTTAAAACATTCCAATCAAAATTAGGTGCATTA
AATGGTCACATTGAAGAAATCTATACAGGACATACCAATGTGAAAGCATATGTTGCAGAACCTAAAGAAGTAGAAACATT
TAATCAAATGAATGAGGACTTATATCAAAGTGGATGGAAGTCCCAATTCTTATCAGGTATCATGATGCCTTTAATGGGTT
TTGTAGGTAACCTTGGTTATGTAGCAGTGATTATTGTTGGTGCTATCTTAGTATCAAGTGGTAAAACAGAGTTTGGTGTC
ATCTTAGCATTTTTAATTTATGTTAGATTATTTACTCAACCACTATCAACTATGGCTCAAGCAATGACTTCTCTACAATC
AGGTACAGCTGCTGCTGAACGTGTATTTGAATTCTTAGAAGAAAAAGAGTTAGAAGATGAATCTCATAAAGAAACCAAAC
TTACCAATGTCAAAGGTGAAGTTACCTTTGACCATGTTAAGTTTGGTTATGATGAAGAAAAATTAGTCATTAATGATTTC
TCTGCTAAGATTAAACCTGGTCAAAAGGTTGCAATTGTTGGTCCTACTGGTGCTGGTAAAACAACCCTTGTCAATCTACT
CATGCGCTTTTATGAATTAAACGAAGGACGCATCTTAATTGATGGTGTAGATATTCAAGATATCACACGTGAAAATGTAC
ATAATCTATTTGGTATGGTCTTACAAGATACTTGGTTATTTGAAGGTAGCGTATATGATAACTTAGTATTTACTAATAAA
GATGTAACTAGAGAACAAGTAGAATCTATTTGTAAAACTGTTGGTATTCATTTCTTCATTAATACCCTTCCAGAAAAATA
TGATACGATCTTAACAGATAAGGTCAACCTATCTGCAGGACAAAAACAATTATTAACAATTGCTCGTGCAATGATTTTAA
ATGCACCGCTATTAATCTTTGATGAAGCAACTTCATCCATTGATACAAGAACAGAAGTATTAATTCAAAAAGCAATGGAT
GAATTAATGACTGGTCGTACATCATTTGTGATTGCACACCGTCTATCTACCATTAGAAATGCTGATTTAATCTTAGTGAT
GAAAGATGGCGACATTGTAGAAAGTGGAAACCATGAGACACTTCTAGGTCAAGATGGCTTCTATGCTGAACTTTACAATT
CACAGTTTGATCCAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(398-545)

ABC transporter transmembrane region (ABC_membrane)

(51-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A553IG99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.422

94.992

0.517

Multiple sequence alignment