Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   DQN45_RS03360 Genome accession   NZ_LS483438
Coordinates   666064..666603 (-) Length   179 a.a.
NCBI ID   WP_012054975.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12975     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 661064..671603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN45_RS03330 (NCTC12975_00664) fdx 661467..661808 (+) 342 WP_005656373.1 ISC system 2Fe-2S type ferredoxin -
  DQN45_RS03335 (NCTC12975_00665) iscX 661808..662002 (+) 195 WP_005659903.1 Fe-S cluster assembly protein IscX -
  DQN45_RS03340 (NCTC12975_00666) - 662053..662667 (-) 615 WP_011272010.1 YfgM family protein -
  DQN45_RS03345 (NCTC12975_00667) hisS 662685..663956 (-) 1272 WP_038440737.1 histidine--tRNA ligase -
  DQN45_RS03350 (NCTC12975_00668) ispG 663966..665072 (-) 1107 WP_011272008.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  DQN45_RS03355 (NCTC12975_00669) - 665081..665992 (-) 912 WP_042593379.1 RodZ family helix-turn-helix domain-containing protein -
  DQN45_RS03360 (NCTC12975_00670) pilF/pilF2 666064..666603 (-) 540 WP_012054975.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  DQN45_RS03365 (NCTC12975_00671) - 666704..667855 (-) 1152 WP_042602892.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  DQN45_RS03370 (NCTC12975_00672) - 668102..668980 (+) 879 WP_042599462.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DQN45_RS03375 (NCTC12975_00673) - 669371..670231 (+) 861 WP_223364826.1 metal ABC transporter substrate-binding protein -
  DQN45_RS03380 (NCTC12975_00674) - 670231..671151 (+) 921 WP_005630123.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20554.15 Da        Isoelectric Point: 8.2571

>NTDB_id=1141557 DQN45_RS03360 WP_012054975.1 666064..666603(-) (pilF/pilF2) [Haemophilus influenzae strain NCTC12975]
MKTISKQLSAVIFPFIFSACVSQSASSLNHQAAAKARVELALSYLQQNNPQLAKINLDNALQHDKNYYLVHSALAHYYQQ
QGQIENAFREYEIAVNLNHKQGDVHNNFGTFLCSQKKFEQAQQQFELALNSPNYYHQADTFENIVLCAYSAQKMDIYQQT
LEKLRQIDGKRAEKFNSLK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1141557 DQN45_RS03360 WP_012054975.1 666064..666603(-) (pilF/pilF2) [Haemophilus influenzae strain NCTC12975]
ATGAAAACAATAAGTAAACAACTAAGTGCGGTTATTTTCCCTTTTATTTTTTCTGCTTGCGTTTCACAATCTGCATCTAG
CTTAAATCATCAAGCTGCCGCTAAAGCGCGCGTGGAACTCGCTTTGAGCTATCTTCAGCAAAATAATCCTCAACTGGCTA
AAATCAACTTAGATAACGCACTTCAACACGATAAAAATTACTATCTCGTGCATTCAGCACTTGCACATTATTATCAACAA
CAAGGGCAAATAGAAAATGCCTTTCGTGAGTATGAAATAGCCGTAAACCTTAATCATAAACAAGGCGATGTGCATAATAA
TTTTGGTACGTTTCTATGTAGTCAAAAGAAATTTGAACAAGCTCAGCAACAATTTGAATTAGCACTTAATTCGCCGAATT
ATTATCATCAAGCAGATACATTTGAAAATATTGTGCTTTGTGCTTATTCCGCGCAAAAAATGGATATTTATCAGCAAACA
TTAGAAAAATTACGTCAAATCGATGGAAAACGTGCGGAAAAATTCAATAGTCTAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

98.883

100

0.989
  pilF Glaesserella parasuis strain SC1401

44.134

100

0.441

Multiple sequence alignment