Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | DQN45_RS03010 | Genome accession | NZ_LS483438 |
| Coordinates | 599020..599433 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain NCTC12975 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 594020..604433
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN45_RS02990 (NCTC12975_00593) | - | 594508..597102 (-) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
| DQN45_RS02995 (NCTC12975_00594) | - | 597201..597998 (+) | 798 | Protein_566 | competence protein ComA | - |
| DQN45_RS03000 (NCTC12975_00595) | comB | 597999..598505 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| DQN45_RS03005 (NCTC12975_00596) | comC | 598502..599023 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| DQN45_RS03010 (NCTC12975_00597) | comD | 599020..599433 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| DQN45_RS03015 (NCTC12975_00598) | comE | 599443..600780 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| DQN45_RS03020 (NCTC12975_00599) | - | 600793..601479 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| DQN45_RS03025 (NCTC12975_00600) | nfuA | 601555..602151 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| DQN45_RS03030 (NCTC12975_00601) | nudC | 602218..603012 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| DQN45_RS03035 (NCTC12975_00602) | - | 603048..603638 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| DQN45_RS03040 (NCTC12975_00603) | - | 603778..604050 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=1141554 DQN45_RS03010 WP_011272047.1 599020..599433(+) (comD) [Haemophilus influenzae strain NCTC12975]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1141554 DQN45_RS03010 WP_011272047.1 599020..599433(+) (comD) [Haemophilus influenzae strain NCTC12975]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |