Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPOKI112_RS07190 | Genome accession | NZ_CP006821 |
| Coordinates | 1491962..1492537 (-) | Length | 191 a.a. |
| NCBI ID | WP_025276431.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki112 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1486962..1497537
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI112_RS07180 (HPOKI112_07455) | - | 1489270..1489860 (-) | 591 | Protein_1394 | restriction endonuclease subunit S | - |
| HPOKI112_RS07185 (HPOKI112_07460) | - | 1489890..1491929 (-) | 2040 | WP_025310039.1 | class I SAM-dependent DNA methyltransferase | - |
| HPOKI112_RS07190 (HPOKI112_07465) | comFC | 1491962..1492537 (-) | 576 | WP_025276431.1 | ComF family protein | Machinery gene |
| HPOKI112_RS07195 (HPOKI112_07470) | tmk | 1492525..1493100 (-) | 576 | WP_025276432.1 | dTMP kinase | - |
| HPOKI112_RS07200 (HPOKI112_07475) | coaD | 1493102..1493575 (-) | 474 | WP_024118156.1 | pantetheine-phosphate adenylyltransferase | - |
| HPOKI112_RS07205 (HPOKI112_07480) | - | 1493575..1494138 (-) | 564 | WP_000780122.1 | UbiX family flavin prenyltransferase | - |
| HPOKI112_RS07210 (HPOKI112_07485) | flgA | 1494148..1494804 (-) | 657 | WP_025310040.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPOKI112_RS07215 (HPOKI112_07490) | uvrD | 1494801..1496846 (-) | 2046 | WP_025310041.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21325.82 Da Isoelectric Point: 8.8889
>NTDB_id=114155 HPOKI112_RS07190 WP_025276431.1 1491962..1492537(-) (comFC) [Helicobacter pylori oki112]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=114155 HPOKI112_RS07190 WP_025276431.1 1491962..1492537(-) (comFC) [Helicobacter pylori oki112]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGACGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTAG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCATTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGACGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTAG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCATTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.382 |
100 |
0.974 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |