Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQN42_RS07470 Genome accession   NZ_LS483436
Coordinates   1505595..1506521 (-) Length   308 a.a.
NCBI ID   WP_003075765.1    Uniprot ID   -
Organism   Streptococcus intermedius strain NCTC11324     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1500595..1511521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN42_RS07450 (NCTC11324_01500) - 1501589..1502554 (+) 966 WP_003075902.1 LacI family DNA-binding transcriptional regulator -
  DQN42_RS07455 (NCTC11324_01501) - 1502640..1503458 (-) 819 WP_003076013.1 Cof-type HAD-IIB family hydrolase -
  DQN42_RS07460 (NCTC11324_01502) amiF 1503585..1504508 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  DQN42_RS07465 (NCTC11324_01503) amiE 1504519..1505586 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  DQN42_RS07470 (NCTC11324_01504) amiD 1505595..1506521 (-) 927 WP_003075765.1 oligopeptide ABC transporter permease OppC Regulator
  DQN42_RS07475 (NCTC11324_01505) amiC 1506521..1508017 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  DQN42_RS07480 (NCTC11324_01506) amiA3 1508391..1510370 (-) 1980 WP_003076037.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34485.55 Da        Isoelectric Point: 9.8589

>NTDB_id=1141458 DQN42_RS07470 WP_003075765.1 1505595..1506521(-) (amiD) [Streptococcus intermedius strain NCTC11324]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPPLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1141458 DQN42_RS07470 WP_003075765.1 1505595..1506521(-) (amiD) [Streptococcus intermedius strain NCTC11324]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCTCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGTATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTCATTGTC
TTGACGTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACCTTGGGAACGCCACCGCTTAAAA
TTATTGTGAAAAATATTATGCCACAATTGGTTTCTGTCATTGTGACTACTGCTTCACAATTACTACCAAGTTTCATTTCA
TACGAAGCCTTTCTATCTTTCTTTGGTTTGGGGCTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCAGATTATTC
ACAAAACGTTACAACAAATGCATATCTTTTCTGGATTCCATTGACAACTTTAATCTTGGTTTCCCTTTCATTATTCGTTG
TCGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

83.117

100

0.831
  amiD Streptococcus thermophilus LMD-9

83.117

100

0.831

Multiple sequence alignment