Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQN42_RS07460 Genome accession   NZ_LS483436
Coordinates   1503585..1504508 (-) Length   307 a.a.
NCBI ID   WP_003074407.1    Uniprot ID   -
Organism   Streptococcus intermedius strain NCTC11324     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498585..1509508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN42_RS07445 (NCTC11324_01499) - 1500154..1501608 (+) 1455 WP_003076157.1 sucrose-6-phosphate hydrolase -
  DQN42_RS07450 (NCTC11324_01500) - 1501589..1502554 (+) 966 WP_003075902.1 LacI family DNA-binding transcriptional regulator -
  DQN42_RS07455 (NCTC11324_01501) - 1502640..1503458 (-) 819 WP_003076013.1 Cof-type HAD-IIB family hydrolase -
  DQN42_RS07460 (NCTC11324_01502) amiF 1503585..1504508 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  DQN42_RS07465 (NCTC11324_01503) amiE 1504519..1505586 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  DQN42_RS07470 (NCTC11324_01504) amiD 1505595..1506521 (-) 927 WP_003075765.1 oligopeptide ABC transporter permease OppC Regulator
  DQN42_RS07475 (NCTC11324_01505) amiC 1506521..1508017 (-) 1497 WP_003074402.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34811.89 Da        Isoelectric Point: 6.1198

>NTDB_id=1141456 DQN42_RS07460 WP_003074407.1 1503585..1504508(-) (amiF) [Streptococcus intermedius strain NCTC11324]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGDIFFDGKRINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDADQHDYSVDKPEMVEIRPGHFVWANKAEVEKYNKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1141456 DQN42_RS07460 WP_003074407.1 1503585..1504508(-) (amiF) [Streptococcus intermedius strain NCTC11324]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTCGGAGAAGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCGCTTGTAGGAGAGTCCGGTTCTGGTAAAACAACAATCGGACGCG
CGATTATTGGTTTGAATAATACTAGTAAGGGAGATATCTTCTTTGATGGAAAAAGAATCAATGGTAAGAAATCAAAAGAA
GAAGAATCAGAAATCATTCGCAAAATTCAGATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTACATTATTTCAGAAGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAAGTAAAAGATATTA
TTCATGAGGTAGGGCTGTTGTCAGAGCATTTAACTCGCTATCCGCATGAATTCTCGGGTGGTCAGCGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGACTTTGTGATTGCCGATGAGCCAATTTCAGCACTTGACGTGTCTGTTCGTGC
TCAAGTTTTAAATCTTCTTAAGAAATTCCAAAAAGATCTGGGCTTGACCTATCTTTTCATTGCTCATGACCTTTCTGTAG
TGCGTTTTATCTCAGATCGGATTGCTGTTATTTATAAGGGAGTGATTGTTGAAGTTGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACTCAGTCTTTATTGTCAGCTGTCCCAATTCCGGATCCGATTTTGGAACGGAAGAAAGTATT
GAAAGTCTACGATGCTGATCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCGGGGCACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAATAAGGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86

Multiple sequence alignment