Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DQN79_RS05745 Genome accession   NZ_LS483435
Coordinates   1138761..1139567 (+) Length   268 a.a.
NCBI ID   WP_003772083.1    Uniprot ID   D4DQW1
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1133761..1144567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS05725 (NCTC11050_01091) - 1134856..1135314 (-) 459 WP_041961324.1 hypothetical protein -
  DQN79_RS05730 (NCTC11050_01092) - 1135412..1135834 (-) 423 WP_040665816.1 DUF5339 family protein -
  DQN79_RS05735 (NCTC11050_01093) ubiB 1136026..1137537 (+) 1512 WP_003772081.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  DQN79_RS05740 (NCTC11050_01094) rluD 1137644..1138762 (-) 1119 WP_003772084.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DQN79_RS05745 (NCTC11050_01095) comL 1138761..1139567 (+) 807 WP_003772083.1 outer membrane protein assembly factor BamD Machinery gene
  DQN79_RS05750 (NCTC11050_01096) pdxH 1139656..1140288 (+) 633 WP_003772087.1 pyridoxamine 5'-phosphate oxidase -
  DQN79_RS05755 (NCTC11050_01097) thiD 1140324..1141145 (+) 822 WP_003772088.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQN79_RS05760 (NCTC11050_01098) - 1141341..1143083 (-) 1743 WP_040665817.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  DQN79_RS05765 (NCTC11050_01099) - 1143469..1143963 (+) 495 WP_231992368.1 ester cyclase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31154.04 Da        Isoelectric Point: 7.9526

>NTDB_id=1141402 DQN79_RS05745 WP_003772083.1 1138761..1139567(+) (comL) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MKKILLVVALGIALGGCAANKGTSDKDAQITQDWPVEKLYAEAQDELNSSNYTRAVKLYELLESRFPQGRYAQQAQLDTA
YAYYKDEEREKALAAVERFQRLHPQHPNMDYALYLKGLILFNEDKSFLNKLASQDWSDRDPKANREAYQAFAELVQRYPQ
SKYVEEASKQMEKLVDALAGNEISVARYYAKRGAHLAAANRAQNIITGFQNTRFTEEALAIMEVSYRKMNRQQLADDTRR
ILQQNFPQSPYLQQEWRSDDAPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1141402 DQN79_RS05745 WP_003772083.1 1138761..1139567(+) (comL) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAAAAAAATTCTTTTAGTAGTAGCTTTGGGTATCGCGCTGGGCGGTTGTGCCGCCAACAAGGGAACTTCCGACAAAGA
TGCGCAGATTACCCAGGATTGGCCGGTCGAGAAGTTGTATGCCGAGGCGCAAGATGAGTTAAACAGCAGCAATTATACGC
GGGCTGTCAAGTTATATGAACTTTTGGAATCGCGTTTTCCTCAGGGGCGTTATGCGCAGCAGGCTCAGTTGGACACGGCC
TATGCCTACTATAAGGACGAGGAGCGCGAAAAAGCATTGGCGGCGGTCGAGCGTTTCCAACGCCTGCATCCGCAGCATCC
GAATATGGATTATGCCCTTTATCTGAAGGGTTTGATTTTGTTTAACGAAGACAAATCGTTCTTGAACAAGCTGGCTTCAC
AAGACTGGTCCGACCGCGATCCGAAAGCCAACCGCGAGGCTTATCAGGCGTTTGCCGAGCTGGTTCAACGCTATCCTCAG
AGCAAATATGTCGAAGAAGCGTCCAAGCAGATGGAAAAACTGGTGGATGCGCTGGCGGGTAACGAAATCTCCGTCGCCCG
TTATTACGCCAAACGCGGCGCGCATCTGGCCGCGGCCAACCGTGCGCAGAATATCATTACCGGCTTCCAGAATACCCGCT
TCACGGAAGAGGCCTTGGCGATTATGGAGGTGTCCTACCGCAAGATGAACCGTCAGCAGTTGGCGGACGATACCCGCCGC
ATTTTGCAGCAAAACTTCCCGCAAAGCCCTTATTTGCAGCAGGAATGGAGGAGCGACGATGCGCCGTGGTGGCGTTATTG
GAAATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DQW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

76.404

99.627

0.761
  comL Neisseria gonorrhoeae MS11

75.281

99.627

0.75

Multiple sequence alignment