Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DQN79_RS05480 Genome accession   NZ_LS483435
Coordinates   1084181..1085908 (-) Length   575 a.a.
NCBI ID   WP_003771958.1    Uniprot ID   -
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079181..1090908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS05435 (NCTC11050_01032) - 1079443..1079901 (+) 459 WP_003771941.1 NfeD family protein -
  DQN79_RS05440 (NCTC11050_01033) - 1079991..1080491 (+) 501 WP_003771943.1 DUF1841 family protein -
  DQN79_RS05445 (NCTC11050_01034) - 1080635..1080973 (+) 339 WP_040665808.1 hypothetical protein -
  DQN79_RS05450 (NCTC11050_01035) - 1081377..1081625 (+) 249 WP_003771948.1 hypothetical protein -
  DQN79_RS05455 (NCTC11050_01036) - 1081669..1081998 (+) 330 WP_040665810.1 NGK_0946 family protein -
  DQN79_RS05460 (NCTC11050_01037) - 1082150..1082608 (-) 459 WP_003771952.1 DUF6636 domain-containing protein -
  DQN79_RS05465 (NCTC11050_01038) - 1082691..1082942 (-) 252 WP_003771954.1 DUF1289 domain-containing protein -
  DQN79_RS05470 (NCTC11050_01039) - 1082947..1083390 (-) 444 WP_003771955.1 DNA polymerase III subunit chi -
  DQN79_RS05475 (NCTC11050_01040) - 1083575..1084072 (-) 498 WP_003771957.1 hypothetical protein -
  DQN79_RS05480 (NCTC11050_01041) recD 1084181..1085908 (-) 1728 WP_003771958.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DQN79_RS11865 - 1085901..1086068 (-) 168 WP_003771962.1 hypothetical protein -
  DQN79_RS05485 (NCTC11050_01042) purN 1086100..1086726 (+) 627 WP_040665856.1 phosphoribosylglycinamide formyltransferase -
  DQN79_RS05490 (NCTC11050_01043) dusA 1086734..1087765 (+) 1032 WP_081456078.1 tRNA dihydrouridine(20/20a) synthase DusA -
  DQN79_RS05495 (NCTC11050_01044) - 1087786..1088346 (+) 561 WP_041961315.1 nitroreductase family protein -
  DQN79_RS05500 (NCTC11050_01045) - 1088408..1088806 (+) 399 WP_144340416.1 hypothetical protein -
  DQN79_RS05505 (NCTC11050_01046) - 1088864..1089202 (+) 339 WP_003771967.1 hypothetical protein -
  DQN79_RS05510 (NCTC11050_01047) - 1089292..1090086 (+) 795 WP_003771970.1 thymidylate synthase -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62236.00 Da        Isoelectric Point: 6.6327

>NTDB_id=1141401 DQN79_RS05480 WP_003771958.1 1084181..1085908(-) (recD) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MNDDEFQTAAADAAVELLSRLYPAAAEVCAPFLRRLFAALEDGHSFIWLTDEEAETLAQAAPLTDSKGLAPLVLRGRRLF
LGRFYRLERDLAGEIRRLAVPPAEIPEAARAAGLLAKWFAQAGSEGQQAAAALALLQNFILISGGPGTGKTTTVAKLLAL
LCQGRERLPRIALAAPTGKAAAHMARALHKALAGLSLSDGLKRHLSALEGQTVHRLLKLRPPQMQPQFDADNPLPLDILI
IDEASMLDLALMLNLLRAVPDGCRVILLGDENQLPSVGAGAVLASLAQTTILDGETAGRLKTLLPQRENPFQTASNPPAL
SANTARLTVSHRFGEHSGLGCLARAVCAGDAETAWAQFDRFPDQLSVRTASVEQLAADFCRQQADYWQAADHADIAAAFD
CQSHLAVLAARRDDAARFNLACRNHLQRHGRIPADAQWFAGQVIMIERNDYPLGLFNGDIGLILRDTDGGDGALAAYFPD
GGTYRKIPLSRLPAYETAFAMTVHKSQGSEYRDVWLLPPADAEGLNRALLYTAVTRAREKFTFVGGRYAFAAACNRNETR
RSGLRDMLADETERI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=1141401 DQN79_RS05480 WP_003771958.1 1084181..1085908(-) (recD) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAATGACGACGAATTCCAAACCGCAGCCGCCGATGCCGCAGTCGAACTGCTCAGCCGCCTTTACCCTGCCGCCGCCGA
GGTGTGCGCCCCGTTTTTACGCCGGCTTTTCGCCGCGCTGGAAGACGGCCACAGCTTTATTTGGCTGACCGACGAAGAAG
CTGAAACACTGGCGCAGGCCGCGCCGCTGACCGATTCGAAAGGCCTTGCCCCGCTGGTTTTGCGCGGGCGGCGGTTGTTT
CTCGGCCGCTTCTACCGGCTCGAACGCGACTTGGCCGGCGAAATCCGCCGCCTGGCCGTCCCGCCGGCCGAAATCCCCGA
AGCCGCCCGCGCCGCCGGGTTGCTGGCGAAATGGTTTGCCCAAGCCGGCAGCGAAGGCCAGCAGGCCGCCGCCGCGCTGG
CCCTGTTGCAAAACTTCATCTTAATTTCCGGCGGCCCCGGCACGGGCAAAACCACCACCGTCGCCAAACTGCTCGCCCTG
CTCTGCCAAGGCCGCGAACGCCTGCCGCGCATCGCGCTGGCCGCACCGACGGGCAAAGCGGCTGCACACATGGCGCGCGC
CCTGCACAAAGCTCTGGCCGGCCTTTCCCTTTCAGACGGCCTCAAGCGGCACCTCTCGGCACTCGAAGGCCAAACCGTCC
ACCGCCTGTTGAAACTGCGCCCGCCGCAAATGCAGCCGCAGTTTGATGCCGACAACCCGCTGCCGCTCGACATCCTGATT
ATCGACGAAGCCTCGATGCTCGACCTCGCCCTGATGCTCAACCTCCTGCGCGCCGTGCCCGACGGCTGCCGCGTCATCCT
TTTGGGCGACGAAAACCAGCTCCCTTCCGTCGGCGCGGGCGCGGTATTGGCCTCTTTGGCGCAAACCACCATCTTGGACG
GCGAAACGGCAGGCCGTCTGAAAACCCTGCTGCCGCAACGCGAAAACCCTTTTCAGACGGCCTCAAACCCGCCCGCGCTT
TCGGCCAACACCGCCCGCCTGACCGTCAGCCACCGTTTCGGCGAACACAGCGGGTTGGGCTGTCTGGCGCGCGCGGTGTG
CGCCGGAGACGCGGAAACCGCTTGGGCGCAGTTCGACCGTTTCCCCGACCAACTGTCCGTCCGCACAGCCTCCGTCGAAC
AACTGGCCGCCGACTTCTGCCGCCAGCAGGCAGACTACTGGCAGGCCGCCGACCATGCCGACATCGCGGCCGCCTTCGAC
TGCCAAAGCCATCTGGCCGTACTGGCGGCAAGGCGCGACGATGCCGCCCGCTTCAACCTCGCCTGCCGCAACCACCTGCA
ACGGCACGGACGCATACCGGCAGATGCACAATGGTTTGCCGGACAAGTCATCATGATTGAACGCAACGACTACCCGCTCG
GTCTCTTCAACGGCGACATCGGCCTGATCCTGCGCGATACCGACGGCGGCGACGGCGCGCTGGCGGCCTATTTCCCCGAT
GGCGGCACATACCGCAAAATCCCCCTCAGCCGCCTGCCCGCCTACGAAACCGCCTTCGCCATGACCGTGCACAAAAGCCA
AGGCTCCGAATACCGCGACGTTTGGCTGCTGCCGCCCGCCGATGCCGAAGGCCTCAACCGCGCCCTGCTCTACACCGCCG
TCACCCGCGCCCGCGAAAAATTTACCTTTGTCGGCGGCAGGTATGCCTTTGCCGCCGCCTGCAACCGCAATGAAACCCGT
CGCAGCGGCCTGCGCGACATGCTGGCGGATGAAACGGAACGGATATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-314)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.192

100

0.574

Multiple sequence alignment