Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOKI102_RS01880 Genome accession   NZ_CP006820
Coordinates   387930..388334 (+) Length   134 a.a.
NCBI ID   WP_025275691.1    Uniprot ID   -
Organism   Helicobacter pylori oki102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 382930..393334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI102_RS01845 (HPOKI102_01955) - 383113..384051 (-) 939 WP_025275686.1 tetraacyldisaccharide 4'-kinase -
  HPOKI102_RS01850 (HPOKI102_01960) - 384048..384830 (-) 783 WP_025275687.1 NAD+ synthase -
  HPOKI102_RS01860 ilvC 385079..386071 (+) 993 WP_025275688.1 ketol-acid reductoisomerase -
  HPOKI102_RS01865 (HPOKI102_01975) minD 386090..386896 (+) 807 WP_025275689.1 septum site-determining protein MinD -
  HPOKI102_RS01870 (HPOKI102_01980) minE 386893..387126 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPOKI102_RS01875 (HPOKI102_01985) dprA 387133..387933 (+) 801 WP_025275690.1 DNA-processing protein DprA Machinery gene
  HPOKI102_RS01880 (HPOKI102_01990) dprB 387930..388334 (+) 405 WP_025275691.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI102_RS01885 (HPOKI102_02000) - 388466..389032 (+) 567 WP_025275692.1 tetratricopeptide repeat protein -
  HPOKI102_RS01890 (HPOKI102_02005) - 389217..389555 (+) 339 WP_025275693.1 hypothetical protein -
  HPOKI102_RS01895 (HPOKI102_02010) - 389539..390099 (+) 561 WP_025275694.1 hypothetical protein -
  HPOKI102_RS01900 (HPOKI102_02015) - 390201..391082 (-) 882 WP_025275695.1 RluA family pseudouridine synthase -
  HPOKI102_RS01905 (HPOKI102_02020) recJ 391082..392632 (-) 1551 WP_025275696.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15204.62 Da        Isoelectric Point: 8.7220

>NTDB_id=114130 HPOKI102_RS01880 WP_025275691.1 387930..388334(+) (dprB) [Helicobacter pylori oki102]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSVEAYDNLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=114130 HPOKI102_RS01880 WP_025275691.1 387930..388334(+) (dprB) [Helicobacter pylori oki102]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCACTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCCCGCATTGAGCATTTTATCAAACTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCGTAGAAGCTTATGACAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948

Multiple sequence alignment