Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQN28_RS09035 Genome accession   NZ_LS483430
Coordinates   54161..54259 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12044     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49161..59259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN28_RS00315 (NCTC12044_00064) - 50027..51367 (+) 1341 WP_002986685.1 hypothetical protein -
  DQN28_RS00320 (NCTC12044_00065) purB 51736..53028 (+) 1293 WP_111686141.1 adenylosuccinate lyase -
  DQN28_RS00325 (NCTC12044_00066) comR 53159..54070 (+) 912 WP_111686142.1 helix-turn-helix domain-containing protein Regulator
  DQN28_RS09035 (NCTC12044_00067) comS 54161..54259 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  DQN28_RS00330 (NCTC12044_00068) ruvB 54290..55288 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQN28_RS00335 (NCTC12044_00069) - 55426..55863 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQN28_RS00340 (NCTC12044_00070) - 55886..56287 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  DQN28_RS00345 (NCTC12044_00071) - 56284..58059 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=1141291 DQN28_RS09035 WP_020833188.1 54161..54259(+) (comS) [Streptococcus pyogenes strain NCTC12044]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1141291 DQN28_RS09035 WP_020833188.1 54161..54259(+) (comS) [Streptococcus pyogenes strain NCTC12044]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment