Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DQN49_RS00285 Genome accession   NZ_LS483429
Coordinates   58577..59095 (-) Length   172 a.a.
NCBI ID   WP_032826263.1    Uniprot ID   -
Organism   Haemophilus aegyptius strain NCTC8502     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53577..64095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN49_RS00270 (NCTC8502_00054) comQ 56889..57176 (-) 288 WP_006995601.1 DUF5374 domain-containing protein Machinery gene
  DQN49_RS00275 (NCTC8502_00055) comP 57169..57852 (-) 684 WP_032826264.1 DUF2572 family protein Machinery gene
  DQN49_RS00280 (NCTC8502_00056) comO 57867..58583 (-) 717 WP_032826301.1 type II secretion system protein J Machinery gene
  DQN49_RS00285 (NCTC8502_00057) comN 58577..59095 (-) 519 WP_032826263.1 type II secretion system protein Machinery gene
  DQN49_RS00290 (NCTC8502_00058) suhB 59295..60098 (+) 804 WP_006995597.1 inositol-1-monophosphatase -
  DQN49_RS00295 (NCTC8502_00059) nrfE 60207..62114 (+) 1908 WP_006995596.1 heme lyase NrfEFG subunit NrfE -
  DQN49_RS00300 (NCTC8502_00060) - 62114..62644 (+) 531 WP_006995595.1 DsbE family thiol:disulfide interchange protein -
  DQN49_RS00305 (NCTC8502_00061) nrfF 62641..63795 (+) 1155 WP_006995594.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19955.14 Da        Isoelectric Point: 9.5864

>NTDB_id=1141211 DQN49_RS00285 WP_032826263.1 58577..59095(-) (comN) [Haemophilus aegyptius strain NCTC8502]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATRQWCLTAQ
VKNDQTCDCLNPTNCPKEAYAHFYYPYFPKKTMIQSHYIYPKEITRFYGARNTSVTRCFILQAENERTLFSFFNVGSIRL
KTNQAASACNQS

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1141211 DQN49_RS00285 WP_032826263.1 58577..59095(-) (comN) [Haemophilus aegyptius strain NCTC8502]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACGGCAATGGTGCTTAACGGCACAA
GTAAAAAATGATCAAACTTGCGATTGTTTAAACCCAACAAACTGCCCGAAAGAGGCCTATGCTCATTTTTACTATCCTTA
TTTTCCTAAAAAAACGATGATTCAAAGCCATTATATTTATCCCAAAGAAATCACGAGGTTTTATGGTGCTCGTAATACCA
GTGTCACTCGTTGCTTTATTCTGCAAGCGGAGAATGAACGTACATTATTTTCATTTTTCAATGTAGGCAGTATCCGTTTG
AAAACCAATCAAGCGGCTAGTGCATGCAATCAATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

91.765

98.837

0.907

Multiple sequence alignment