Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DQN49_RS00275 Genome accession   NZ_LS483429
Coordinates   57169..57852 (-) Length   227 a.a.
NCBI ID   WP_032826264.1    Uniprot ID   -
Organism   Haemophilus aegyptius strain NCTC8502     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52169..62852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN49_RS00260 (NCTC8502_00052) nrdR 52959..53408 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  DQN49_RS00265 (NCTC8502_00053) recC 53463..56843 (-) 3381 WP_006995602.1 exodeoxyribonuclease V subunit gamma -
  DQN49_RS00270 (NCTC8502_00054) comQ 56889..57176 (-) 288 WP_006995601.1 DUF5374 domain-containing protein Machinery gene
  DQN49_RS00275 (NCTC8502_00055) comP 57169..57852 (-) 684 WP_032826264.1 DUF2572 family protein Machinery gene
  DQN49_RS00280 (NCTC8502_00056) comO 57867..58583 (-) 717 WP_032826301.1 type II secretion system protein J Machinery gene
  DQN49_RS00285 (NCTC8502_00057) comN 58577..59095 (-) 519 WP_032826263.1 type II secretion system protein Machinery gene
  DQN49_RS00290 (NCTC8502_00058) suhB 59295..60098 (+) 804 WP_006995597.1 inositol-1-monophosphatase -
  DQN49_RS00295 (NCTC8502_00059) nrfE 60207..62114 (+) 1908 WP_006995596.1 heme lyase NrfEFG subunit NrfE -
  DQN49_RS00300 (NCTC8502_00060) - 62114..62644 (+) 531 WP_006995595.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25508.34 Da        Isoelectric Point: 8.4287

>NTDB_id=1141209 DQN49_RS00275 WP_032826264.1 57169..57852(-) (comP) [Haemophilus aegyptius strain NCTC8502]
MTIQKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQNMTEEKKQTACIDLPLNNNESVKQISIA
LEGAADAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
YAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1141209 DQN49_RS00275 WP_032826264.1 57169..57852(-) (comP) [Haemophilus aegyptius strain NCTC8502]
ATGACAATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAACA
TGACAGAGGAGAAAAAACAAACTGCCTGTATTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCGCCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTA
TATGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

95.154

100

0.952

Multiple sequence alignment