Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM62_RS05475 Genome accession   NZ_LS483418
Coordinates   1082875..1084677 (-) Length   600 a.a.
NCBI ID   WP_012027200.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10234     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077875..1089677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM62_RS05450 (NCTC10234_01073) - 1079260..1079745 (-) 486 WP_012775190.1 LURP-one-related/scramblase family protein -
  DQM62_RS05455 (NCTC10234_01075) prsA 1080013..1081014 (-) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  DQM62_RS05460 (NCTC10234_01076) - 1081075..1081794 (-) 720 WP_009910106.1 O-methyltransferase -
  DQM62_RS05465 (NCTC10234_01077) - 1081869..1082417 (-) 549 WP_002938103.1 DUF6630 family protein -
  DQM62_RS05470 (NCTC10234_01078) - 1082433..1082873 (-) 441 WP_012775191.1 hypothetical protein -
  DQM62_RS05475 (NCTC10234_01079) pepF 1082875..1084677 (-) 1803 WP_012027200.1 oligoendopeptidase F Regulator
  DQM62_RS05480 (NCTC10234_01080) coiA 1084908..1085849 (-) 942 WP_012027201.1 competence protein CoiA Machinery gene
  DQM62_RS05485 (NCTC10234_01081) metG 1085913..1087916 (-) 2004 WP_012775442.1 methionine--tRNA ligase -
  DQM62_RS05490 (NCTC10234_01082) - 1088072..1088665 (+) 594 WP_012027204.1 DUF1361 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69246.49 Da        Isoelectric Point: 4.5800

>NTDB_id=1140955 DQM62_RS05475 WP_012027200.1 1082875..1084677(-) (pepF) [Streptococcus suis strain NCTC10234]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLSLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAVFSQAFAFYEPEFMGITEEKLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEITDEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1140955 DQM62_RS05475 WP_012027200.1 1082875..1084677(-) (pepF) [Streptococcus suis strain NCTC10234]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACCGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTACTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTTAGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGGCATTACTGAAGAGAAATTGGAAGCCTTTAAAGTAGAAGAGCCGGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTTTTAGCAGCTAAGGACCATGTCTTGTCACAAGAGGTGGAAGAAGTATTGGCGGCGACC
AGCGAAATTTTCGAATCACCAGCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCACAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CCTATGAAGCTATGTACGGTACTTATGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACTTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCATCGTTACATCAATTTGCGTAAGAAGCTCCTGGGGA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTGGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATATTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCCCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698

Multiple sequence alignment