Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   T303_RS06540 Genome accession   NZ_CP006819
Coordinates   1223589..1224398 (-) Length   269 a.a.
NCBI ID   WP_024704147.1    Uniprot ID   -
Organism   Streptococcus thermophilus ASCC 1275     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218589..1229398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T303_RS06515 (T303_06605) - 1219513..1219899 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  T303_RS10400 - 1219957..1220883 (-) 927 Protein_1224 GNAT family N-acetyltransferase -
  T303_RS06525 (T303_06620) yidA 1221091..1221900 (+) 810 WP_011226081.1 sugar-phosphatase -
  T303_RS06530 (T303_06625) - 1221902..1223116 (+) 1215 WP_002953123.1 aminoacyltransferase -
  T303_RS06535 (T303_06630) - 1223168..1223529 (-) 362 Protein_1227 YbaN family protein -
  T303_RS06540 (T303_06635) vicX 1223589..1224398 (-) 810 WP_024704147.1 MBL fold metallo-hydrolase Regulator
  T303_RS06545 (T303_06640) vicK 1224407..1225747 (-) 1341 WP_011681205.1 cell wall metabolism sensor histidine kinase VicK Regulator
  T303_RS06550 (T303_06645) vicR 1225740..1226447 (-) 708 WP_011681206.1 response regulator YycF Regulator
  T303_RS06555 (T303_06650) - 1226974..1227741 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  T303_RS06560 (T303_06655) - 1227753..1228586 (+) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  T303_RS06565 (T303_06660) - 1228604..1229302 (+) 699 WP_011681209.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29943.90 Da        Isoelectric Point: 5.5779

>NTDB_id=114095 T303_RS06540 WP_024704147.1 1223589..1224398(-) (vicX) [Streptococcus thermophilus ASCC 1275]
MSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGMD
IYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTMEN
QLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=114095 T303_RS06540 WP_024704147.1 1223589..1224398(-) (vicX) [Streptococcus thermophilus ASCC 1275]
ATCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGAAAA
GAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTGATC
TTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATGGAT
ATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACATAT
TTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATCCAC
AATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCTGGT
CTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTGGTC
AACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCGGTA
ATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAAAAT
CAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACTAAC
AGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781

Multiple sequence alignment