Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DQN54_RS10120 Genome accession   NZ_LS483417
Coordinates   1875779..1876732 (-) Length   317 a.a.
NCBI ID   WP_000345127.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1870779..1881732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS10095 (NCTC11902_01936) - 1871540..1872163 (-) 624 WP_000932635.1 hypothetical protein -
  DQN54_RS10100 (NCTC11902_01937) jag 1872214..1873200 (-) 987 WP_000260014.1 RNA-binding cell elongation regulator Jag/EloR -
  DQN54_RS10105 (NCTC11902_01938) - 1873219..1874043 (-) 825 WP_000727909.1 membrane protein insertase YidC -
  DQN54_RS10110 (NCTC11902_01939) rnpA 1874018..1874389 (-) 372 WP_000739246.1 ribonuclease P protein component -
  DQN54_RS12050 - 1874406..1874537 (-) 132 WP_000768904.1 hypothetical protein -
  DQN54_RS10115 (NCTC11902_01940) - 1874538..1875728 (-) 1191 WP_000167769.1 acetate kinase -
  DQN54_RS10120 (NCTC11902_01941) comYH 1875779..1876732 (-) 954 WP_000345127.1 class I SAM-dependent methyltransferase Machinery gene
  DQN54_RS10125 - 1876793..1877387 (-) 595 Protein_1884 class I SAM-dependent methyltransferase -
  DQN54_RS10130 (NCTC11902_01944) comGG/cglG 1877490..1877936 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  DQN54_RS10135 (NCTC11902_01945) comGF/cglF 1877914..1878375 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQN54_RS10140 (NCTC11902_01946) comGE/cglE 1878338..1878640 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQN54_RS10145 (NCTC11902_01947) comGD/cglD 1878603..1879007 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQN54_RS10150 (NCTC11902_01948) comGC/cglC 1879000..1879326 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  DQN54_RS10155 (NCTC11902_01949) comGB/cglB 1879328..1880344 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQN54_RS10160 (NCTC11902_01950) comGA/cglA/cilD 1880292..1881233 (-) 942 WP_000249555.1 competence type IV pilus ATPase ComGA Machinery gene
  DQN54_RS10165 (NCTC11902_01951) - 1881308..1881673 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35686.85 Da        Isoelectric Point: 4.2706

>NTDB_id=1140903 DQN54_RS10120 WP_000345127.1 1875779..1876732(-) (comYH) [Streptococcus pneumoniae strain NCTC11902]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSNLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1140903 DQN54_RS10120 WP_000345127.1 1875779..1876732(-) (comYH) [Streptococcus pneumoniae strain NCTC11902]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGACGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTAATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment